Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01548 ATGGATCGACCGGTTCATTACGATTCGTCGGAGAGACCGCCTTATTTGTCCGCCGGCGACGACGACGACGACGAATCAGTGGTTTCCGATTGCGAGAGCGGTCTTTCCGACGACAGGCTTGTTCGCGATGCCGAAGGTGTTGACCTTATCCAAAGCAAATTCGTTGCGGGATTGGGTTCGCGCGGGTTGAAAGCTGAAATTGTGGCGATTCACAGGAATGCTTGTTCTACTGTGATGACGCAAGCGCGTGTTCAGTCCTTTCAGATCTTCGCGCGTGCGGTGGCTAAGTTGCGCGATGGGAATGCCAACTTGAAGCTTGCGTGGTATGGTGCTTCTAGTAAGGAAGAGATAACCGACATCGTTCAACACGGTTTTGGTCATGCTCATTGCCGTGGTCTACGTCTCTCTCCAGAAGATTCTCCTCTTGAAAGTGTTAAACGTTGTGCTGTTGGTAAAGACGGTTTGAGGCACTTGTTGCTGTGTCGTGTTATCTTGGGGAGGATGGAGGTTGTGCCTCCTGGTTCTGACCAATGCCGTTCGAGTTCTGAAGAGTATGATTCTGGGGTGGATAGTCTTTCATCTCCCAAAGAGTACATCATTTGGGGTAACCAGATGAATACTCATGTCTTGCCCGAATATGTTTTGAGTTTCAGGCTTACTTCATTGAAAGGGCATGTGAAGATTGGGGAGCCTTTGAAACCATCTTCCCCTTGGATGCCATTTCCAGCTCTAATTTCAGTGCTTTCCAAGATTTTGCCTCCTTCTGATATTGCCTTCATTTCCAAGTTTCACAAAGATTATAGAGAAAAGAAGATTTCTCGACAAGAACTTATCCAAAAAGTGAGACAAATTGCAGGAGACAAATTGCTGGTTTCGGCCATCAAATCTTTCAGGACTAAGAAAATACCTGCAAGCTTTAAGCAAACAAGTTGA 933 0.4673 MDRPVHYDSSERPPYLSAGDDDDDESVVSDCESGLSDDRLVRDAEGVDLIQSKFVAGLGSRGLKAEIVAIHRNACSTVMTQARVQSFQIFARAVAKLRDGNANLKLAWYGASSKEEITDIVQHGFGHAHCRGLRLSPEDSPLESVKRCAVGKDGLRHLLLCRVILGRMEVVPPGSDQCRSSSEEYDSGVDSLSSPKEYIIWGNQMNTHVLPEYVLSFRLTSLKGHVKIGEPLKPSSPWMPFPALISVLSKILPPSDIAFISKFHKDYREKKISRQELIQKVRQIAGDKLLVSAIKSFRTKKIPASFKQTS. 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01548 310 ProSiteProfiles PARP catalytic domain profile. 24 235 IPR012317 GO:0003950
Seca12g01548 310 Pfam RCD1-SRO-TAF4 (RST) plant domain 233 298 IPR022003 -
Seca12g01548 310 PANTHER INACTIVE POLY [ADP-RIBOSE] POLYMERASE SRO4-RELATED 38 300 IPR044964 -
Seca12g01548 310 MobiDBLite consensus disorder prediction 1 29 - -
Seca12g01548 310 Gene3D - 38 218 - -
Seca12g01548 310 ProSiteProfiles RST domain profile. 232 303 IPR022003 -
Seca12g01548 310 MobiDBLite consensus disorder prediction 1 19 - -
Seca12g01548 310 SUPERFAMILY ADP-ribosylation 42 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01548 Seca-Chr12 16340345 16343583 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01548 - - gmx:100784311 430.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01548 12 16340345 16343583 Seca4g03077 4 52809686 52812104 PCT