Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01549 ATGGCACCCACAGCGCCAGCCAACAGTTCAATTCGCAGGTCGAGTTCACGCCCTCAGCTGGATCTCAGCAAAGCAGAAATTCAAGGGAACGTCGAGGATAAGGATCCCTCAATTTTGTTACCTAATCAATCTCATGATATATCTCACCTGGCTCTTGACATTGGAGGATCTCTGATAAAGTTGGTGTACTTTTCAAGACACGAAGACAAATCAAGCGATGATAAAAGGATCAGAAGAGCGAAGGATCGACTGGGATTTCCCAATGGTAATAGGAGAAGCTATCCTATTCTTGGTGGGAGGCTTCATTTTTTGAAGTTTGAGACAAGCAAGATTAACGAGTGCTTAGAATTCATTCACTCAAAGCAGCTTCACTGTAGTGGATGGGAATCGCATTATTCTGATGGTGTGGCTGATCAGAATGCCATAATAAAGGCTACTGGTGGTGGAGCATACAAATTTGCTGACCTTTTCAAAGAGAGACTCGGACTTAGCCTTGACAAAGAAGATGAAATGGGTTGTCTTGTAGCCGGAGCAAATTTCTTGCTTAAGGCAATTCGTCATGAAGCTTTTACACACATTGAGGGCCAGAAAGAGTTTGTTCAAATTGACCCTAATGATTTGTTTCCTTATCTTCTAGTTAATATTGGATCTGGTGTTAGTATGATCAAGGTTGATGGGGATGGAAAGTTTGAGAGGGTTAGTGGGACAAATGTCGGTGGTGGTACTTACTGGGGCTTGGGAAGGCTGTTAACAAAGTGCGAGAGCTTTGATGAGTTACTTGAGCTGAGTCAAAAAGGAGATAATAGAAACACTGACATGCTTGTTGGGGACATTTATGGGGGCGTGGACTATTCTAAGATTGGGCTATCGGCTTCTACCATTGCTTCAAGTTTTGGCAAGGCTACAACAGAAAAAAAGGAGCTTGAAGATTACAGACCTGAAGATATATCACTCTCTCTTCTACGAATGATTTCGTACAATATTGGCCAGATATCTTACTTGAATGCACTGCGATTTGGTTTAAAGCGTATCTTTTTTGGAGGATTTTTTATAAGGGGTCATGCCTATACCATGGACGCCATTTCTTTTGCAATTCATTACTGGTCTACAGGGGCTACACAAGCAATGTTCTTGCGACATGAAGGATTTCTGGGAGCATTAGGTGCATTTATGAGCTATGAAAAACATGGTTTGGATGACCTCATGGTGCATCAGTTAGTTGAAAGGTTCCCAATGGGTGCTCCATATACGGGAGGCAAGATTCATGGCCCACCGCTTAGGAATTTGAATGAAAAGGCAAGTGAGCGAATTGGAAAATTTGATAAGCAGCTCAATCAGTTAGGAAATTTTATGTTTTTAACTATTCTTGTGCAGATTTCATGGATGGAGAAGTTTCTGCAGAAGGGAACTGAGATCACTGCTCCTGTGCCAATGGCTCCGCCTGGAACTACTGGACTTGGGGGTTTTGAAGTTCCTTTGTCAAAAGGAAGTACTCTGCGATCTGATGCTAGTGCTCTAAATGTTGGTGTTCTCCATCTAGTACCAAATTTGGAGGTGTTTCCATTATTAGCAGACCCAAAAATGTATGAACCTAATACTATTGATCTCTCAGATCACAGTGAATTAGAGTATTGGTTCAAAATTTTGTCAGATCACTTGCCAGATCTCGTTGACAAGGCTGTAGCAAGCGAAGGTGGGACTGATGATGCCAAAAGAAGGGGTGATGCTTTTGCTCGTGCATTTTCTGCTCACCTGGCAAGGTTAATGGAGGAGCCTGCTGCATACGGGAAGTTAGGCTTGGCCAAACTATTGGAAATGAGGGAAGAGTGCTTGAGAGAATTCCATTTTGTCGATGCCTATATAAGCATAAAGCAGAGGGAAAATGAGGCATCACTTGCTGTTTTACCTGATTTGTTAATGGAGCTTGATAGTCTGGATGAGGAAACAAGATTACTTACTCTAATTGAAGGTGTTCTTGCTGCAAACATTTTTGACTGGGGATCACGTGCATGTGTGGATCTCTATCATAAAGGAACTATTATTGAAATTTACAGAATGAGTCGCAATAAAATGCATAGGCCTTGGCGAGTGGATGATTTTGATGCCTTTAGAGAGAGAATGTTGGGAACTGGGGACAAGAAACTGCCCCCACATAGAAGGGCTTTACTTTTTGTGGATAATTCAGGTGCTGACATTGTTCTAGGGATGCTTCCCCTGGCACGAGAGCTCATCCGTCGTGGAACCGAAGTGGTTCTGGTTGCAAACTCCCTTCCTGCTTTAAATGATGTGACTGCAATGGAGCTTCCTGACATTGTTGCTGAGGCTGCCAAGCACTGTGACATTCTTAGGCGAGCTGCTGAATCTGGAGGCTTGATTGTGGATGCAATGACTAATACTTCAGATAGTTCTAAGGAAAATTCATCTTCCGTTCCCTTGATGGTTGTTGAGAACGGGTGTGGTGGTCCATGTATAGACTTAAGACAGGTCAGCTCTGAGCTGGCTGCTGCTGCAAAAGATGCTGATTTGATAATTTTGGAAGGGATGGGTAGAGCTCTTCATACCAACCTCAACGCTCAGTTTAAATGTGATGCTTTGAAGCTTGCAATGGTGAAAAACCAGAGATTGGCTGAAAAGTTGGTTAAAGGGAACATATACGACTGTGTTTGCAAGTACGAGCCTGCTAATTGA 2688 0.4286 MAPTAPANSSIRRSSSRPQLDLSKAEIQGNVEDKDPSILLPNQSHDISHLALDIGGSLIKLVYFSRHEDKSSDDKRIRRAKDRLGFPNGNRRSYPILGGRLHFLKFETSKINECLEFIHSKQLHCSGWESHYSDGVADQNAIIKATGGGAYKFADLFKERLGLSLDKEDEMGCLVAGANFLLKAIRHEAFTHIEGQKEFVQIDPNDLFPYLLVNIGSGVSMIKVDGDGKFERVSGTNVGGGTYWGLGRLLTKCESFDELLELSQKGDNRNTDMLVGDIYGGVDYSKIGLSASTIASSFGKATTEKKELEDYRPEDISLSLLRMISYNIGQISYLNALRFGLKRIFFGGFFIRGHAYTMDAISFAIHYWSTGATQAMFLRHEGFLGALGAFMSYEKHGLDDLMVHQLVERFPMGAPYTGGKIHGPPLRNLNEKASERIGKFDKQLNQLGNFMFLTILVQISWMEKFLQKGTEITAPVPMAPPGTTGLGGFEVPLSKGSTLRSDASALNVGVLHLVPNLEVFPLLADPKMYEPNTIDLSDHSELEYWFKILSDHLPDLVDKAVASEGGTDDAKRRGDAFARAFSAHLARLMEEPAAYGKLGLAKLLEMREECLREFHFVDAYISIKQRENEASLAVLPDLLMELDSLDEETRLLTLIEGVLAANIFDWGSRACVDLYHKGTIIEIYRMSRNKMHRPWRVDDFDAFRERMLGTGDKKLPPHRRALLFVDNSGADIVLGMLPLARELIRRGTEVVLVANSLPALNDVTAMELPDIVAEAAKHCDILRRAAESGGLIVDAMTNTSDSSKENSSSVPLMVVENGCGGPCIDLRQVSSELAAAAKDADLIILEGMGRALHTNLNAQFKCDALKLAMVKNQRLAEKLVKGNIYDCVCKYEPAN. 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01549 895 FunFam Pantothenate kinase 1 49 187 - -
Seca12g01549 895 FunFam Pantothenate kinase 2 273 382 - -
Seca12g01549 895 Gene3D Uncharacterised protein PF01937, DUF89, domain 3 696 893 - -
Seca12g01549 895 PIRSF PanK_long 1 895 IPR015844 GO:0004594|GO:0015937
Seca12g01549 895 Gene3D - 42 201 - -
Seca12g01549 895 SUPERFAMILY Actin-like ATPase domain 160 393 IPR043129 -
Seca12g01549 895 MobiDBLite consensus disorder prediction 1 21 - -
Seca12g01549 895 Pfam Fumble 49 391 IPR004567 GO:0004594|GO:0005524|GO:0015937
Seca12g01549 895 FunFam Pantothenate kinase 2 41 201 - -
Seca12g01549 895 Gene3D - 532 617 IPR035073 -
Seca12g01549 895 Gene3D - 272 382 - -
Seca12g01549 895 FunFam Pantothenate kinase 2 531 617 - -
Seca12g01549 895 PANTHER PANTOTHENATE KINASE 19 785 IPR004567 GO:0004594|GO:0005524|GO:0015937
Seca12g01549 895 SUPERFAMILY AF1104-like 511 893 IPR036075 -
Seca12g01549 895 NCBIfam type II pantothenate kinase 49 392 IPR004567 GO:0004594|GO:0005524|GO:0015937
Seca12g01549 895 SUPERFAMILY Actin-like ATPase domain 47 188 IPR043129 -
Seca12g01549 895 Pfam Damage-control phosphatase ARMT1-like domain 603 881 IPR002791 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01549 Seca-Chr12 16350931 16364409 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01549 K24265 K09680 gmx:100783082 1540.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01549 12 16350931 16364409 Seca4g03068 4 52605664 52619269 ECH
Seca12g01549 12 16350931 16364409 Seca12g01549 12 16350931 16364409 ECH
Seca12g01549 12 16350931 16364409 Seca4g03068 4 52605664 52619269 PCT