Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03065 ATGCTGAGATTTGCCGCAAGCGTGAAGAGACTCGTGGGAACAGCGTCGGCGCCATCGCCGGCCGTTACGGTTCTGCCACGGCTTTACCACGAGAGGGTTGTGGACCACTACAACAACCCCAGGAATGTTGGATCTTTCGACAAGAACGACCCGACCGTGGGTACGGGTCTAGTCGGGGCACCCGCCTGTGGCGACGTCATGAAACTTCAGATTAAGGTTGATGAGAACACAGGAAAAATCGTCGATGCTCGCTTCAAGACCTTCGGCTGTGGTTCCGCCATTGCTTCTTCCTCCGTCGGTCTACTGAATGGGTAA 315 0.5556 MLRFAASVKRLVGTASAPSPAVTVLPRLYHERVVDHYNNPRNVGSFDKNDPTVGTGLVGAPACGDVMKLQIKVDENTGKIVDARFKTFGCGSAIASSSVGLLNG. 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03065 104 Pfam NifU-like N terminal domain 29 99 IPR002871 GO:0005506|GO:0016226|GO:0051536
Seca4g03065 104 SUPERFAMILY SufE/NifU 28 99 - -
Seca4g03065 104 CDD IscU_like 28 99 IPR002871 GO:0005506|GO:0016226|GO:0051536
Seca4g03065 104 Gene3D - 28 101 - -
Seca4g03065 104 PANTHER IRON-SULFUR CLUSTER ASSEMBLY ENZYME NIFU HOMOLOG 11 99 IPR002871 GO:0005506|GO:0016226|GO:0051536
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03065 Seca-Chr4 52577960 52580770 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03065 K22068 - gmx:100806169 172.555
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03065 4 52577960 52580770 Seca4g03065 4 52577960 52580770 ECH
Seca12g01553 12 16390270 16390742 Seca4g03065 4 52577960 52580770 PCT