Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03055 ATGCAGTCGTTGAGCAATAAGGTTTGCATGGATTTGCCGTTACAGTTTTTAATGGATTCGGAGGTTGGGATTCGGAGGCAATGGGTGAATTGCACGAGCCGGAGGAGAAGGAACGGAAGTGTGATCGTTGCGTGCGGTGCGGAGAGGAACGGGAGCATGAGGGCGAGTTCAGGTTCAAGCTCGAGTTCGTTTTTGTCTCAGAGCCATAACTATGCTATCTTGAAGCACCAAATGGAGGTAGCTGCGAAATCTGAGGATTATGAAGAGGCTGCGAGGATTCGTGACTCGCTGAAATGTTTTGAAGAGGATGTGCCGGTTCTGCGTCTGCGAAGGTTGTTGAAGGAAGCAATTGCTGATGAGAGATTCAAGGATGCAGCTACATATCGTGATGAGCTAAAAGAGATTGCCCCACATTCTCTCTTAAAATGTTCAAGTGATGCTACAACCTCGGGAATTAGGGTCGAAGTTAGGAGTGCATATATAGAGGGCAGAAGTAAGCCTTCAGAGGAGCGGTACTTCTTTGCATATAGAATCAGAATTACCAATAATTCAAACCGCCCTGTTCAACTTCTTAGAAGGCATTGGATTATAACAGATGCTAATGGGAAAACTGAAAATATTTGGGGAATTGGGGTTGTTGGTGAACAGCCAGCTATACTTCCTAGGACTAGTTATGAATACTCTTCCACATGCCCATTAAAAACACAAAATGGTAGAATGGAGGGTGACTTTGAAATGGCACATATTGATCGAGCAGGCTCAAGACCATTTAGTGTGGCCATTGCCCCTTTCTCTCTCTCTCTACTTGGAGATGATGATGGTCAAACTATTTGA 834 0.4484 MQSLSNKVCMDLPLQFLMDSEVGIRRQWVNCTSRRRRNGSVIVACGAERNGSMRASSGSSSSSFLSQSHNYAILKHQMEVAAKSEDYEEAARIRDSLKCFEEDVPVLRLRRLLKEAIADERFKDAATYRDELKEIAPHSLLKCSSDATTSGIRVEVRSAYIEGRSKPSEERYFFAYRIRITNNSNRPVQLLRRHWIITDANGKTENIWGIGVVGEQPAILPRTSYEYSSTCPLKTQNGRMEGDFEMAHIDRAGSRPFSVAIAPFSLSLLGDDDGQTI. 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03055 277 Gene3D UVR domain 70 104 - -
Seca4g03055 277 ProSiteProfiles ApaG domain profile. 146 273 IPR007474 -
Seca4g03055 277 SUPERFAMILY C-terminal UvrC-binding domain of UvrB 72 101 IPR036876 -
Seca4g03055 277 SUPERFAMILY ApaG-like 148 267 IPR036767 -
Seca4g03055 277 Gene3D ApaG domain 142 272 IPR036767 -
Seca4g03055 277 Pfam ApaG domain 164 247 IPR007474 -
Seca4g03055 277 Pfam UvrB/uvrC motif 108 135 IPR001943 GO:0005515
Seca4g03055 277 Pfam UvrB/uvrC motif 77 98 IPR001943 GO:0005515
Seca4g03055 277 PANTHER OS05G0170800 PROTEIN 40 273 - -
Seca4g03055 277 ProSiteProfiles UVR domain profile. 68 103 IPR001943 GO:0005515
Seca4g03055 277 ProSiteProfiles UVR domain profile. 103 138 IPR001943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03055 Seca-Chr4 52297567 52300297 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03055 - K06195 gmx:100799029 402.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03055 4 52297567 52300297 Seca4g03055 4 52297567 52300297 ECH
Seca12g01570 12 16867286 16874837 Seca4g03055 4 52297567 52300297 PCT