Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01570 ATGAGGAAAAGGAGTGAGATCGTAGCATGTGCTTCTGAGGGAGACAGTGGGAGCAGCATCAGCAGCAGCTCGTTTATCTCCCGGACCCAAACCTACGCCCTCTTGAAGCAGCAAATGGAGGTAGCTGCTAAATCCGAGGATTACAAAGAAGCAGCTAGAATTCGAGACTCTATAAAGTTATTTGAAGACGAGGAGCCTGTTTTGCGTCTAAGGAGACTGTTGAAGGAAGCTATTGCCGAAGAAAGATTCCAGGATGCAGCTAGTTATCGTGATGAGCTAAAAAAAATTGCTCCACACTCTCTTTTAAAATGTTCCAGTGATGCTACAACATTGGGAATCAGGGTTCAGGTTAGGAGTGTATATATAGAGGGCAGAAGTCAACCTTCCAAGGGGCTATACTTCTTTGCATATAGAATAAGAATTACCAATACCTCAGACCACCCTGTTCAACTTCTTAGAAGGCATTGGATCATAACTGATGCTAATGGGAGAACGGAAAATGTCTGGGGGATTGGGGTCGTTGGTGAGCAGCCGGTAATACATCCCGGGACTAGTTTTGAATACTCTTCAGCATGCCCATTATGCACACCAAATGGTAGAATGGAAGGTGACTTTGAGATGATCCATATTGAGAGCGTAGGCTCACGATCATTTAATGTGGCCATTGCCCCGTTCTCACTCTCTCTGCTTGGAGATGATGACAGCCTTACTATTTGA 717 0.4491 MRKRSEIVACASEGDSGSSISSSSFISRTQTYALLKQQMEVAAKSEDYKEAARIRDSIKLFEDEEPVLRLRRLLKEAIAEERFQDAASYRDELKKIAPHSLLKCSSDATTLGIRVQVRSVYIEGRSQPSKGLYFFAYRIRITNTSDHPVQLLRRHWIITDANGRTENVWGIGVVGEQPVIHPGTSFEYSSACPLCTPNGRMEGDFEMIHIESVGSRSFNVAIAPFSLSLLGDDDSLTI. 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01570 238 ProSiteProfiles UVR domain profile. 64 99 IPR001943 GO:0005515
Seca12g01570 238 SUPERFAMILY C-terminal UvrC-binding domain of UvrB 30 62 IPR036876 -
Seca12g01570 238 Gene3D ApaG domain 103 233 IPR036767 -
Seca12g01570 238 PANTHER OS05G0170800 PROTEIN 11 234 - -
Seca12g01570 238 Pfam UvrB/uvrC motif 35 62 IPR001943 GO:0005515
Seca12g01570 238 Pfam UvrB/uvrC motif 69 96 IPR001943 GO:0005515
Seca12g01570 238 ProSiteProfiles ApaG domain profile. 107 234 IPR007474 -
Seca12g01570 238 ProSiteProfiles UVR domain profile. 29 64 IPR001943 GO:0005515
Seca12g01570 238 Pfam ApaG domain 125 208 IPR007474 -
Seca12g01570 238 Hamap Protein ApaG [apaG]. 106 237 IPR023065 -
Seca12g01570 238 SUPERFAMILY ApaG-like 109 228 IPR036767 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01570 Seca-Chr12 16867286 16874837 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01570 - K06195 gmx:100782176 384.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01570 12 16867286 16874837 Seca12g01570 12 16867286 16874837 ECH
Seca12g01570 12 16867286 16874837 Seca4g03055 4 52297567 52300297 PCT