Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03016 ATGAAATTCATATTGGTACATTCTGCAATGGGTTCCATTTTCATGTGCCATTTCATTCTACAATTGACCATAGTGTATACTATTTTTGTTGCAACTCTAGGAGACAACACAACAGATTCCTACTGGCTTCTAAGAATTAAATCAGAATTGATTGATCCATTTGGAGCCCTGAGCAACTGGTCTCCAACTTCTCATTTCTGCAGTTGGAATGGACTAACATGTGAAGTTGATCAGACACATATTGTAGGCCTGAATTTGTCTGGCTCAGGAATATCAGGTTCTCTTTCAGTTGAGTTCAGTCACCTCATTTCTCTTCAAACACTTGATTTGTCTTCAAATTCCCTTACTGGCTCCATCCCTTCTGAACTTGGGCAGTTTCAAAATCTAAGAATATTGCTACTTTACTCAAATGATCTCTCTGGTAACATTCCAGCAGAGATAGGTAATTTGAACAAGTTGCAAGTTCTTAGATTAGGAGATAACATGTTGACAGGTGAAATCCCACCTAGTATTGGCAACTTAAGAGAGTTGGCAGTGTTGGGTCTAGCCAACTGCAACTTGAATGGAAGCATACCCATTGAGGTTGGTAACTTGAAGCATCTAATATCTCTTGATTTACAAGTGAATAGTCTGAGTGGCCTCATACCCCAAGAGATTCAAGGCTGTAAAGAGCTACAAAATTTTGCAGCATCAAACAACATGCTTGAAGGAAACATACCCTCCTCTATGGGGTCTCTCAAATCATTGACAATTCTGAATCTGGCCAATAACAGTCTATCTGGATCAATTCCTACTACTTTGAGTGGTCTCTCCAACTTGACATACCTGAATTTGCTTGGGAACAATTTAAATGGGGAAATTCCTTCTGAGCTTAACAGTTTGAGCCAGCTACAGAAGCTTGACTTATCCAGAAACAACCTTTCTGGATCACTAACCCTCCTTAATATCAAACTACAGAATCTTGAAACTCTTGTTTTGTCTGATAATGCTTTAACAGGTAGTATTCCAAGTAACTTCTGCCTCAAAGGTTCAAAACTTGAGCAACTTTTCTTGTCTCAGAATAAGCTTTCTGGCAGATTTCCCTTGGAGTTACTCAACTGCTCCTCAATCCAACAGTTGGACCTTTCTGATAACAGCTTTGAAGGTGAACTTCCATCCAGCCTGGACAAACTTCTGAACCTCACAGATCTTGTACTCAACAACAACAGCTTCATTGGATCTCTACCTCCAGAAATTGGAAATATTAGTAGCTTGAAAAGTCTTTTCTTGTTTGGTAACTGTTTCACAGGAAAAATCCCAGTGGAGATTGGAAGGCTTCAAAGATTGAACACCATTTACCTTTATGATAACCAGATGTCTGGACCTATACCAAGAGAATTAACAAACTGCACAAGGTTAAAGGAAATTGACTTCTTTGGAAACCATTTTTCAGGGTCCATTCCAGAGACTATAGGTAAGCTCAAGGACTTAACTGTTCTCCATTTAAGGCAAAATGACTTATCAGGTCCAATCCCACCAAGCATGGGACACTGTAAAAAGCTTCAGTTATTAGCATTAGCAGATAACAAGTTCACAGGTTCTATACCACCCACATTCAGTTACCTTTCAGAACTTAGAACCATTACCCTTTACAACAACTCCTTTGAAGGACCTCTCCCTGATTCACTCTCCCTCCTCAGAAACCTTAGAATCATAAATTTTTCCAATAACAAGTTCAGTGGCAGTATCTTTCCTCTGACTGGTTCAAATTCTCTCACTGTTTTAGACTTGACAAACAACAGCTTCTCAGGTCCAATTCCTTCTATTCTAGCTAACTCCAAAGATCTCACCCGTCTCAGACTTGCAGACAATTATCTTACAGGAAGCATTCCTTCTGAGTTTGGTCAGCTTACTGAGCTAAACTTTCTTGATTTATCATTCAACAACTTGACAGGAGATGTGCCACCTCAACTCTCAAAATGCAAGAAAATTGAACACCTTCTGCTGAATAACAATAGGTTAACTGGTGAAATGTCTCCATGGTTGGGAAGCTTAAAGGAACTTGGTGAGGTAGATCTTTCATTCAATAACTTTCATGGAAGGGTTCCTGCTGAGCTTGGTGACTGCTCAAAATTACTTAAGCTTTCTCTCCACCACAACAATCTTTCAGGTGAAATTCCACAAGAGATTGGAAATCTAACCTCTCTCAATGTCTTCAACTTGCAAAGCAACAGTCTCTCTGGCCTCATTCCATCAACAATTCAGCAATGCACAAAGCTGTATGAACTCAGGCTCTCAGAAAACTTCCTGACAGGTACTATACCAGTTGAGCTAGGAGGGGTCACAGAGTTGCAAGTCATATTGGATTTGAGTAGAAACCAATTTTCAGGTGAGATTCCATCATCTCTAGGAAATCTCATGAAGCTAGAAAGACTTGATCTTTCTTTTAATCAACTTCAAGGACAAGTTCCTCCTTCACTTGGTAAACTTACCAGCCTGCTTGTGCTAAACCTCTCAAATAACCATCTCCAAGGCCACATTCCTTCAACATTTTCAGGGTTCCCATTAAGCTCCTTCCTTAACAATGGCCGCTTGTGTGGCCTGCCATTAGCACTGTGCTTAGAAGTTGCTGGGAAGAAGCAAATGCAGCTGTCAAACACAGAAGTGGCAGCAATCATAGTTGCTATTGTGCTTACTTCCACAGTGATATGCTCAGTAATGTTGTATATAATGTTGAGAATGTGGTGCAACTGGAAAAAAGTGGCTGTTTCAAGTGCAGATGATGGTGTGATTGAGCAGAAGAGAGAAGAGACTATATGGGACCATGCTGATCAGAAGACAAGAAATGGAGAGTACTGGAATATGAATTCCTTTGGGTTGATTCCTTCACCAGATTAG 2877 0.4011 MKFILVHSAMGSIFMCHFILQLTIVYTIFVATLGDNTTDSYWLLRIKSELIDPFGALSNWSPTSHFCSWNGLTCEVDQTHIVGLNLSGSGISGSLSVEFSHLISLQTLDLSSNSLTGSIPSELGQFQNLRILLLYSNDLSGNIPAEIGNLNKLQVLRLGDNMLTGEIPPSIGNLRELAVLGLANCNLNGSIPIEVGNLKHLISLDLQVNSLSGLIPQEIQGCKELQNFAASNNMLEGNIPSSMGSLKSLTILNLANNSLSGSIPTTLSGLSNLTYLNLLGNNLNGEIPSELNSLSQLQKLDLSRNNLSGSLTLLNIKLQNLETLVLSDNALTGSIPSNFCLKGSKLEQLFLSQNKLSGRFPLELLNCSSIQQLDLSDNSFEGELPSSLDKLLNLTDLVLNNNSFIGSLPPEIGNISSLKSLFLFGNCFTGKIPVEIGRLQRLNTIYLYDNQMSGPIPRELTNCTRLKEIDFFGNHFSGSIPETIGKLKDLTVLHLRQNDLSGPIPPSMGHCKKLQLLALADNKFTGSIPPTFSYLSELRTITLYNNSFEGPLPDSLSLLRNLRIINFSNNKFSGSIFPLTGSNSLTVLDLTNNSFSGPIPSILANSKDLTRLRLADNYLTGSIPSEFGQLTELNFLDLSFNNLTGDVPPQLSKCKKIEHLLLNNNRLTGEMSPWLGSLKELGEVDLSFNNFHGRVPAELGDCSKLLKLSLHHNNLSGEIPQEIGNLTSLNVFNLQSNSLSGLIPSTIQQCTKLYELRLSENFLTGTIPVELGGVTELQVILDLSRNQFSGEIPSSLGNLMKLERLDLSFNQLQGQVPPSLGKLTSLLVLNLSNNHLQGHIPSTFSGFPLSSFLNNGRLCGLPLALCLEVAGKKQMQLSNTEVAAIIVAIVLTSTVICSVMLYIMLRMWCNWKKVAVSSADDGVIEQKREETIWDHADQKTRNGEYWNMNSFGLIPSPD. 959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03016 958 ProSiteProfiles Leucine-rich repeat profile. 320 342 IPR001611 GO:0005515
Seca4g03016 958 SUPERFAMILY L domain-like 653 862 - -
Seca4g03016 958 ProSiteProfiles Leucine-rich repeat profile. 104 126 IPR001611 GO:0005515
Seca4g03016 958 Gene3D Ribonuclease Inhibitor 289 383 IPR032675 -
Seca4g03016 958 Gene3D Ribonuclease Inhibitor 193 288 IPR032675 -
Seca4g03016 958 Gene3D Ribonuclease Inhibitor 384 480 IPR032675 -
Seca4g03016 958 Gene3D Ribonuclease Inhibitor 481 578 IPR032675 -
Seca4g03016 958 PRINTS Leucine-rich repeat signature 105 118 - -
Seca4g03016 958 PRINTS Leucine-rich repeat signature 294 307 - -
Seca4g03016 958 SUPERFAMILY L domain-like 38 309 - -
Seca4g03016 958 Pfam Leucine rich repeat 584 643 IPR001611 GO:0005515
Seca4g03016 958 Pfam Leucine rich repeat 248 307 IPR001611 GO:0005515
Seca4g03016 958 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 578 870 - -
Seca4g03016 958 Pfam Leucine rich repeat N-terminal domain 39 74 IPR013210 -
Seca4g03016 958 Coils Coil 958 958 - -
Seca4g03016 958 Pfam Leucine Rich Repeat 104 123 IPR001611 GO:0005515
Seca4g03016 958 Pfam Leucine Rich Repeat 801 823 IPR001611 GO:0005515
Seca4g03016 958 FunFam Uncharacterized protein 195 287 - -
Seca4g03016 958 FunFam Uncharacterized protein 385 480 - -
Seca4g03016 958 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 504 939 - -
Seca4g03016 958 Gene3D Ribonuclease Inhibitor 579 667 IPR032675 -
Seca4g03016 958 Gene3D Ribonuclease Inhibitor 768 864 IPR032675 -
Seca4g03016 958 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 481 577 - -
Seca4g03016 958 SMART LRR_typ_2 487 511 IPR003591 -
Seca4g03016 958 SMART LRR_typ_2 198 221 IPR003591 -
Seca4g03016 958 SMART LRR_typ_2 823 846 IPR003591 -
Seca4g03016 958 SMART LRR_typ_2 726 749 IPR003591 -
Seca4g03016 958 SMART LRR_typ_2 799 822 IPR003591 -
Seca4g03016 958 SMART LRR_typ_2 246 269 IPR003591 -
Seca4g03016 958 SMART LRR_typ_2 294 317 IPR003591 -
Seca4g03016 958 SMART LRR_typ_2 391 415 IPR003591 -
Seca4g03016 958 SMART LRR_typ_2 102 126 IPR003591 -
Seca4g03016 958 SMART LRR_typ_2 678 702 IPR003591 -
Seca4g03016 958 SMART LRR_typ_2 150 174 IPR003591 -
Seca4g03016 958 SMART LRR_typ_2 318 342 IPR003591 -
Seca4g03016 958 SMART LRR_typ_2 630 654 IPR003591 -
Seca4g03016 958 Gene3D Ribonuclease Inhibitor 668 767 IPR032675 -
Seca4g03016 958 Gene3D Ribonuclease Inhibitor 36 192 IPR032675 -
Seca4g03016 958 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 36 194 - -
Seca4g03016 958 SUPERFAMILY RNI-like 324 681 - -
Seca4g03016 958 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 288 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03016 Seca-Chr4 51736912 51739788 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03016 160 888 Receptor kinase-like Gene Family AT5G46330 35.348 3.83e-118 387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03016 - - gmx:100802757 1540.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03016 4 51736912 51739788 Seca4g03016 4 51736912 51739788 ECH
Seca12g01580 12 17058500 17061400 Seca4g03016 4 51736912 51739788 PCT