Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01580 ATGTGCCTCTTTCTGTTATTGGCCATACTTGATACTTCTTTTGTTGCAACTCTTGGAAATGATGAAACAGATTCCTATTGGCTTCTGAGGATTAAATCAGAACTGGTAGATCCACTAGGAGCCATGAGCAACTGGTCTCCAACAACTCATGTCTGCAGCTGGAATGGAATAACATGTGCAATTGATCAGAAACATGTTGTAGGCCTGAATCTGTCTGGTTCAGGAATATCAGGTTCCATTCCTGTTGAGTTCAGTCAGCTCACTTCTCTTCAAACACTTGATTTGTCTTCAAATTCCCTTACTGGCTCCATCCCTTCAGAGCTTGGGAAGCTTCAAAATCTAAGAATACTGCAACTATACTCAAACTACCTCTCTGGTAACATTCCTTCAGAGATAGGTAATTTGAAGAAGTTGCAAGTTCTTAGAATAGGAGACAACATGTTGACAGGTGAAATTACACCTAGAATCTTCAACTTGAGTGAGTTGACAGTGTTGGGTCTAGGCTACTGCAACTTAAATGGAAGCATACCTGAAGAGATTCAAGGCTGTGAAGAGCTCCAAAACTTTGCAGCATCAAACAACATGCTTGAAGGAGACATTCCCTCCTCTATGGGGTCCCTTACATCATTGAATATTCTGAATCTGGCCAATAACAGTCTATCTGGATCAATTCCTACATCCTTGAGCCATCTTTCTAACTTGACATACCTGAATTTGCTTGGAAACAAACTAAATGGTGAAATTCCTTCCCAGCTTAATAGTCTGACTCAGCTGCAGAAGCTAGACTTGTCTAGAAACAACCTTTCTGGATCAATACCTCTCCTTAACATCAAACTGCAGAGTCTTGAAACTCTAGTTCTGTCTGATAATGCTTTGACAGGTAGAATTCCAAGCAATTTCTGCCTCAGAGATTCAAAGCTTCAGCAACTTTTCTTGGCTAGGAATATGCTCTCTGGCAAATTTCCCTTGGTGTTACTCAACTGCTCCTCAATCCAACAGTTGGACCTTTCTGATAATAGCTTTGAAGGAGAACTTCCATCCAGCCTGATTGGAAATATTAGTGGCTTGGAAAGTCTTTTCCTATTTGGTAACTTTTTTACAGGTAAAATTCCAGTAGAGATTGGAAAGCTGCAGAGATTGAGCACCATTTACCTCTATGATAACCAGATGTCTGGACTTATACCAAGAGAGTTAACAAACTGCACAAGCTTAAGGGAAGTTGACTTCTTTGGAAACCACTTCACAGGGCCTATTCCAGAGACTATAGGTAAGCTGAAGGAGTTAGTTGTTCTTCATTTGAGGCAGAATGACTTGTCAGGTCCAATCCCACCAAGCATGGGGTATTGTAAAAGTCTTCAGATATTGGCCTTAGCAGATAACAGGCTGTCAGGTTCCATTCCACCCACATTCAGTTACCTTTCAGAACTTATTAAGATTACCCTTTACAACAACTCCTTTGAAGGACCTCTCCCCCAATCACTCTCTTCTCTCAAAAACATCAAAATCATAGATTTTTCCCACAATAAGTTCAGTGGAAGCTTCTCTCCTCTCACTGCTTCAAATTCTCTTACTTTTCTGGACTTGACTAACAACAGCTTCTCAGGTCCCATCCCTTCTACTCTAGCCAATTCCAGAAATCTCCACCGCCTAAGACTTGCATACAATAATCTCACAGGAAGCATTCCTTCTGAATTTGGCCAGCTTACTGAGCTCAACTTTCTTGACTTGTCATTCAACAATTTAACAGGAGATGTGCCACATCAACTCTCAAACTCTCAGAAAATAGAACAAATCCTGCTGAGCAATAACAAATTGACTGGCAAAATACCTCAGTGGTTGGGAAGCTTACAAGAACTTGGTGAGTTAGATCTCTCATACAATAACTTCAGTGGTAAGGTACCTGCTGAGCTTGGTAACTGCTCAAAATTACTTAAGCTTTCTCTCCATCACAACAACCTCTCTGGTGAAATCCCCCAAGAGATTGGAAACCTCACTTCTCTCAATGTCCTCAATTTGAAAAGGAACAGTCTCTCTGGCCTCATTCCTTCAACAATTCAGCATTGCACTAAGCTGTATGAGCTCAGACTCTCAGAAAACTTCCTGTCAGGTACTATACCATTTGAACTTGGAGGGCTTGCTGAGCTGCAAGTTATATTGGACTTGAGTAAAAATCACTTCTCTGGTGAGATTCCACCATCTCTAGGAAACCTCATGAAGCTAGAAAGACTCAACCTTTCTTTCAATCAACTTGAAGGAAAAGTTCCTCCTTCACTTGGTAAACTTACCAGCTTGCATGTGCTAAATCTCTCAAATAACCATCTTGAAGGCCAGATTCCTTCAATCTTTTCAGGGTTCCCACAAAGCTCCTTCCTGAACAATGACCACTTGTGTGGCCCACCATTAGTATTGTGCTCAGAATCAACAACACAGGGGAAGATGCAGCTGTCAAACAGACAAGTGGCAGCAATCATTGTGGCCATTGTCTTTACTTCCACTGTGATATGCTTAGTTATGTTGTATATCATGCTTAGAATCTGGTGCAACTGGAGAAAAGTTGCTATTTCAAGTGCAGAAGGTGGTACTGTTGCTCAGAAGAAAGAGGAGGGTAGATGGGTCTGTGCTGATCAGAAGACAAGGAATGGAGAGTACTGGAATATGAATTCCTTTGGGTTCATTCCTTCACCAGATAAGCAGAATTCAGCAACACCAACTTGCTTCTTTAATCTCAAAATAGAAGACATGGAAAATACAAATATATAA 2760 0.4101 MCLFLLLAILDTSFVATLGNDETDSYWLLRIKSELVDPLGAMSNWSPTTHVCSWNGITCAIDQKHVVGLNLSGSGISGSIPVEFSQLTSLQTLDLSSNSLTGSIPSELGKLQNLRILQLYSNYLSGNIPSEIGNLKKLQVLRIGDNMLTGEITPRIFNLSELTVLGLGYCNLNGSIPEEIQGCEELQNFAASNNMLEGDIPSSMGSLTSLNILNLANNSLSGSIPTSLSHLSNLTYLNLLGNKLNGEIPSQLNSLTQLQKLDLSRNNLSGSIPLLNIKLQSLETLVLSDNALTGRIPSNFCLRDSKLQQLFLARNMLSGKFPLVLLNCSSIQQLDLSDNSFEGELPSSLIGNISGLESLFLFGNFFTGKIPVEIGKLQRLSTIYLYDNQMSGLIPRELTNCTSLREVDFFGNHFTGPIPETIGKLKELVVLHLRQNDLSGPIPPSMGYCKSLQILALADNRLSGSIPPTFSYLSELIKITLYNNSFEGPLPQSLSSLKNIKIIDFSHNKFSGSFSPLTASNSLTFLDLTNNSFSGPIPSTLANSRNLHRLRLAYNNLTGSIPSEFGQLTELNFLDLSFNNLTGDVPHQLSNSQKIEQILLSNNKLTGKIPQWLGSLQELGELDLSYNNFSGKVPAELGNCSKLLKLSLHHNNLSGEIPQEIGNLTSLNVLNLKRNSLSGLIPSTIQHCTKLYELRLSENFLSGTIPFELGGLAELQVILDLSKNHFSGEIPPSLGNLMKLERLNLSFNQLEGKVPPSLGKLTSLHVLNLSNNHLEGQIPSIFSGFPQSSFLNNDHLCGPPLVLCSESTTQGKMQLSNRQVAAIIVAIVFTSTVICLVMLYIMLRIWCNWRKVAISSAEGGTVAQKKEEGRWVCADQKTRNGEYWNMNSFGFIPSPDKQNSATPTCFFNLKIEDMENTNI. 920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01580 919 Pfam Leucine rich repeat 451 510 IPR001611 GO:0005515
Seca12g01580 919 Pfam Leucine rich repeat 596 653 IPR001611 GO:0005515
Seca12g01580 919 Pfam Leucine rich repeat 522 581 IPR001611 GO:0005515
Seca12g01580 919 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 516 808 - -
Seca12g01580 919 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 473 848 - -
Seca12g01580 919 SUPERFAMILY RNI-like 520 787 - -
Seca12g01580 919 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 419 515 - -
Seca12g01580 919 SMART LRR_typ_2 664 687 IPR003591 -
Seca12g01580 919 SMART LRR_typ_2 207 231 IPR003591 -
Seca12g01580 919 SMART LRR_typ_2 87 111 IPR003591 -
Seca12g01580 919 SMART LRR_typ_2 568 592 IPR003591 -
Seca12g01580 919 SMART LRR_typ_2 135 159 IPR003591 -
Seca12g01580 919 SMART LRR_typ_2 377 400 IPR003591 -
Seca12g01580 919 SMART LRR_typ_2 255 278 IPR003591 -
Seca12g01580 919 SMART LRR_typ_2 279 303 IPR003591 -
Seca12g01580 919 SMART LRR_typ_2 616 640 IPR003591 -
Seca12g01580 919 SMART LRR_typ_2 761 784 IPR003591 -
Seca12g01580 919 SMART LRR_typ_2 712 737 IPR003591 -
Seca12g01580 919 SMART LRR_typ_2 425 449 IPR003591 -
Seca12g01580 919 ProSiteProfiles Leucine-rich repeat profile. 89 112 IPR001611 GO:0005515
Seca12g01580 919 ProSiteProfiles Leucine-rich repeat profile. 257 279 IPR001611 GO:0005515
Seca12g01580 919 SUPERFAMILY L domain-like 303 583 - -
Seca12g01580 919 SUPERFAMILY L domain-like 23 300 - -
Seca12g01580 919 Gene3D Ribonuclease Inhibitor 21 184 IPR032675 -
Seca12g01580 919 FunFam Leucine-rich repeat receptor protein kinase EMS1 200 299 - -
Seca12g01580 919 Pfam Leucine Rich Repeat 739 761 IPR001611 GO:0005515
Seca12g01580 919 Pfam Leucine Rich Repeat 89 111 IPR001611 GO:0005515
Seca12g01580 919 Pfam Leucine Rich Repeat 667 688 IPR001611 GO:0005515
Seca12g01580 919 Pfam Leucine Rich Repeat 763 785 IPR001611 GO:0005515
Seca12g01580 919 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 300 394 - -
Seca12g01580 919 SMART LRR_sd22_2 87 116 - -
Seca12g01580 919 SMART LRR_sd22_2 377 409 - -
Seca12g01580 919 SMART LRR_sd22_2 135 161 - -
Seca12g01580 919 SMART LRR_sd22_2 449 475 - -
Seca12g01580 919 SMART LRR_sd22_2 255 284 - -
Seca12g01580 919 SMART LRR_sd22_2 568 594 - -
Seca12g01580 919 SMART LRR_sd22_2 497 519 - -
Seca12g01580 919 Gene3D Ribonuclease Inhibitor 256 513 IPR032675 -
Seca12g01580 919 Pfam Leucine rich repeat N-terminal domain 23 59 IPR013210 -
Seca12g01580 919 Gene3D Ribonuclease Inhibitor 185 255 IPR032675 -
Seca12g01580 919 Gene3D Ribonuclease Inhibitor 514 813 IPR032675 -
Seca12g01580 919 PRINTS Leucine-rich repeat signature 90 103 - -
Seca12g01580 919 PRINTS Leucine-rich repeat signature 255 268 - -
Seca12g01580 919 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 21 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01580 Seca-Chr12 17058500 17061400 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01580 37 825 Receptor kinase-like Gene Family AT5G46330 35.610 3.90e-128 413
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01580 - - gmx:100818792 1483.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01580 12 17058500 17061400 Seca12g01580 12 17058500 17061400 ECH
Seca12g01580 12 17058500 17061400 Seca4g03016 4 51736912 51739788 PCT