Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03012 ATGGACATGAAGGAATACTCAGTTTCCTGTAAAAGACATAGGAAGGAACCATTTTCTGCAGCACACCACAAAAGAAGACGACAACACCAATGCACACAGACAAACACAAACAATAGTGTTGCTCCAGAACAAACATGTCCACAAAACCATTCTCTGAAATTGGCAACTTTCACTTCCCAAAACATTCCAACTATGCTACCTGTTTTTGCTGCTTTGCTGCTTCTTGTTACTTCAATTGCTCCAACATTGTCTCATCCCATTGTCTCTGATTCTGGCCATCCCCTGAAGGCTAACCAGACTTATAGAGCAGGTGCAGAGTTGCTCAAGTTAAGGAGAATCAGAGCTCACCTTAAGAAGATCAACAAGCCTGCTGTCAAGACAATTCAGGCATTTTTCCTTTGCTCTAGAAGTCCAGATGGTGATTTGATAGATTGTGTTTTATCTCATCAGCAGCCTGCTTTTGATCATCCTGATCTTAGAGGGCACACACCATTGGATCCACCAGAAAGGCCAAGGGGCTATAGTAGTACCAATGGAGAAATTGTAACTGAGAGCTTTCAACTATGGACTGATTCTGGTGAAACTTGTCCAGAAGGAACTGTTCCAATCAGAAGAACAACAGAAGAGGATATTCTAAGAGCAAGTTCTATCAGAAGATTTGGAAGAAAACCAAGACCTGTACGGAGAGACTCATCTGGCAGTGGTCATGAGCATGCAGTTGTTTTTGTAAATGGAAATCAATACTATGGAGCAAAGGCAAGCATAAATGTGTGGTCACCCCGTGTAACGAATCAATATGAATTCAGCTTATCACAGATATGGGTTATTGCTGGCTCCTTTGGACATGATCTGAATACTATAGAAGCTGGTTGGCAGGTAAGTCCAGAACTTTATGGGGACAACTATCCAAGGTTCTTCACTTATTGGACAGCAGATGCATATCAAACAACTGGATGTTACAACTTACTCTGTTCAGGCTTTATCCAAACTAACAACAGGATAGCAATTGGGGCAGCAATCTCCCCAAGATCCTCTTATAACAGTAGACAGTTTGATATTGGCTTAATGGTTTGGAAGGATCCAAAACATGGACACTGGTGGTTAGAGTACGGTTCTTCGGGACTACTAGTTGGGTACTGGCCAGCAAACATGTTCAGTCACTTGAGAAGTCACGCGAGCATGGTACAATTTGGAGGAGAAATTGTGAATACTCGTTCAAGGGGTTATCACACTGCCACTCAAATGGGGAGTGGTCATTTTGCTGAAGAAGGATTTAGAAAAGCAGCATATTTTAGAAATTTACAGGTTGTTGATTGGGACAATAATTTGCTTCCTCTTGCAAATATCCACCAGTTTGCTGACCATTCCAATTGTTATGACATAAGGCAGGGGACCAATAATGTTTGGGGAACTTACTTTTACTATGGAGGTCCCGGAAGGAATGTTAATTGCCCATAG 1458 0.4191 MDMKEYSVSCKRHRKEPFSAAHHKRRRQHQCTQTNTNNSVAPEQTCPQNHSLKLATFTSQNIPTMLPVFAALLLLVTSIAPTLSHPIVSDSGHPLKANQTYRAGAELLKLRRIRAHLKKINKPAVKTIQAFFLCSRSPDGDLIDCVLSHQQPAFDHPDLRGHTPLDPPERPRGYSSTNGEIVTESFQLWTDSGETCPEGTVPIRRTTEEDILRASSIRRFGRKPRPVRRDSSGSGHEHAVVFVNGNQYYGAKASINVWSPRVTNQYEFSLSQIWVIAGSFGHDLNTIEAGWQVSPELYGDNYPRFFTYWTADAYQTTGCYNLLCSGFIQTNNRIAIGAAISPRSSYNSRQFDIGLMVWKDPKHGHWWLEYGSSGLLVGYWPANMFSHLRSHASMVQFGGEIVNTRSRGYHTATQMGSGHFAEEGFRKAAYFRNLQVVDWDNNLLPLANIHQFADHSNCYDIRQGTNNVWGTYFYYGGPGRNVNCP. 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03012 485 MobiDBLite consensus disorder prediction 156 176 - -
Seca4g03012 485 Pfam Neprosin 266 478 IPR004314 -
Seca4g03012 485 Gene3D - 256 371 - -
Seca4g03012 485 PANTHER PROTEIN, PUTATIVE (DUF239)-RELATED-RELATED 111 481 - -
Seca4g03012 485 MobiDBLite consensus disorder prediction 14 44 - -
Seca4g03012 485 MobiDBLite consensus disorder prediction 16 30 - -
Seca4g03012 485 FunFam Putative carboxyl-terminal proteinase 257 376 - -
Seca4g03012 485 Pfam Neprosin activation peptide 136 241 IPR025521 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03012 Seca-Chr4 51660319 51663894 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03012 - - mtr:11436542 782.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01591 12 17145634 17148860 Seca4g03012 4 51660319 51663894 ECH
Seca4g03012 4 51660319 51663894 Seca4g03012 4 51660319 51663894 ECH
Seca12g01591 12 17145634 17148860 Seca4g03012 4 51660319 51663894 PCT