Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01591 ATGGACATGAAAGGATATTCAGTTTCCTGGACAAAACATATGAAAGAGTCATTTTTTGCAGCTCCCCACACAAGAAGACAACACCAATGCATACAAACAAGTTCACAAAATCATTCCCTCAAATTGGCTGTTTCTATTTCTACTTCCCAAAATACTCTACCTAAGCTACCTGTCTTTGTTGCTTTCCTGCTATTTCTTACCTCAATTAGCCCTGTATTGTCACACCCCATTTCCTTGGATTCACATTCACCACTACCCTCTCACTCTCATCACTCCAATTCTAACCAAACTTTTAGACCAACTGTAGAGTTGAATAAGTTGAGGAGAATCAGAGCTCACCTCAAGAAGATCAACAAGCCTGCTCTCAAGACAATTAAGAGTCCAGATGGGGATTTGATAGATTGTGTTTTATCTCATAAGCAACCAGCTTTTGATCATCCTCAACTCAAAGGGCAAAGACCATTGGATCCACCAGAAAGGCCAAAGGGATACAACAATGGAGAAAATGTAACACAAAGTTTTCAGCTTTGGAGTGATTCTGGTGAAGCATGCCCAGAAGGAACTGTTCCAATCAGAAGAATAACAGAACAAGATTTTCTAAGAGCAAGCTCTATCAGAAGATTTGGAAGGAAACCAAGAGGTGTACGGAGGGATTCATCAGGCAATGGTCATGAGCATGCAGTTGTTTTTGTAAATGGAGATCAATACTATGGAGCAAAAGCAAGCATAAACGTGTGGACCCCAAGGGTAACAGATCAATATGAATTCAGCTTATCACAGATATGGGTTATTGCTGGATCATTTGGTAATGATCTGAATACAATAGAAGCTGGATGGCAGGTAAGCCCTGAGCTATATGGGGACAACTATCCTAGATTCTTCACTTATTGGACAACGGATGCATATCAAGCAACTGGATGCTACAACTTATTATGTTCAGGATTTGTCCAAACAAACAACAGGATAGCAATAGGGGCTGCAATCTCCCCAAGATCAGACTTTAATGGCAGACAATTTGATATTGGCTTAATGGTTTGGAAGGACCCAAAGCATGGACATTGGTGGCTGGAATTTGGATCAGGGCTACTAGTTGGGTATTGGCCAGCATACTTGTTTAGTCACTTGAGAAGCCATGCAAGCATGGTTCAATTTGGAGGAGAAATTGTGAATACTCGTTCAAGGGGCTACCACACTGGCACTGAAATGGGAAGTGGACATTTTGCAGAAGAAGGTTTTAGAAAAGCAGCTTATTTTAGAAACTTACAAGTTGTTGATTGGGACAATAACTTGCTTCCTCTATCAAATATCCACCAGTTGGCTGATCATTCCAATTGCTATGATATAAGGGAGGGAAGGAACAATGTTTGGGGAACTTACTTTTATTATGGAGGTCCTGGAAGGAATGTGAGATGTCCATGA 1419 0.408 MDMKGYSVSWTKHMKESFFAAPHTRRQHQCIQTSSQNHSLKLAVSISTSQNTLPKLPVFVAFLLFLTSISPVLSHPISLDSHSPLPSHSHHSNSNQTFRPTVELNKLRRIRAHLKKINKPALKTIKSPDGDLIDCVLSHKQPAFDHPQLKGQRPLDPPERPKGYNNGENVTQSFQLWSDSGEACPEGTVPIRRITEQDFLRASSIRRFGRKPRGVRRDSSGNGHEHAVVFVNGDQYYGAKASINVWTPRVTDQYEFSLSQIWVIAGSFGNDLNTIEAGWQVSPELYGDNYPRFFTYWTTDAYQATGCYNLLCSGFVQTNNRIAIGAAISPRSDFNGRQFDIGLMVWKDPKHGHWWLEFGSGLLVGYWPAYLFSHLRSHASMVQFGGEIVNTRSRGYHTGTEMGSGHFAEEGFRKAAYFRNLQVVDWDNNLLPLSNIHQLADHSNCYDIREGRNNVWGTYFYYGGPGRNVRCP. 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01591 472 MobiDBLite consensus disorder prediction 143 162 - -
Seca12g01591 472 PANTHER PROTEIN, PUTATIVE (DUF239)-RELATED-RELATED 108 468 - -
Seca12g01591 472 Gene3D - 245 359 - -
Seca12g01591 472 FunFam Putative carboxyl-terminal proteinase 245 364 - -
Seca12g01591 472 Pfam Neprosin 254 465 IPR004314 -
Seca12g01591 472 Pfam Neprosin activation peptide 124 229 IPR025521 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01591 Seca-Chr12 17145634 17148860 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01591 - - gmx:100782442 805.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01591 12 17145634 17148860 Seca4g03012 4 51660319 51663894 ECH
Seca12g01591 12 17145634 17148860 Seca12g01591 12 17145634 17148860 ECH
Seca12g01591 12 17145634 17148860 Seca4g03012 4 51660319 51663894 PCT