Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03000 ATGAAGATGACTAAGCTTCCTTCTTTGTTCTCTTTGAGGCACTTGTTGGTGTTGTCCCTCGCTTTGAATGTGAGCTTCATACTGAGAATGGTGTATGAAGGTGACCACCGTTATTGTTTGGGAAAAGAAAGAGCAGGGGAGCATAATAATATCCACAAATCACGTATGCTTATATCATCATCATCCACTTCCTCTTTCTCTAATTCTACTTGCCCAGATCGTACTACAGGAGGAGGAAGCAGAAATAGAGTAATCAATCTCGACCATTGGAAGCATAGGAAAGAAGTTGGTGGGGTCATATGCCCGATGCGCACACTGCATGAAGACACCCTTTCGGCCGTGACCATAAGACTATTATGGAAGTGCTCCTTGGGTTGTCTCAGTGTTATTAGATTTTTACAACTTTTGGCCGCCCCAATCGCCCTCAGTAAATGGAGGTCCATCCATCTCCAACGTTTTTTTGTCGTCTTTTACCCTTTAGCTGTGCATGGTTCCCATTGTTGCAGCGGAGATCCGACAGTGTATGAAAAATTTTGGCGACAAAGGGGAGACAAGACAACGATCATAATTCCGGGGTGGCAATCGATGAGCTATTTTTCTGATGTGTCGAACATATGCTGGTTTTTGGAACCTGAATTTGCGAAGGAGGTAGTGAGGTTGCACAAAGTGGTGGGTAATGCAGTGACAGAAGGGCGTCACATTGTTGTTGGGACAGGTTCTTCTCAGCTTTTTCTGGCTGCTCTTTATGCTCTGTCCCCGCCTGATTCACCTCAACCCGTCAGCGTTGTGTGTGCCTCACCCTATTACTCGTCCTACCCATCAATGACGGATTGCCTGAAATCAGGACTTTACAAATGGGCTGGTGATGCAGAAAGTTTTGACAAAGATGGTCCCTACATTGAGCTTGTTACTTCTCCCAATAATCCTGATGGACATGTAAGGCGATCTAAGGTTAACCGAAGCCAGGGACTTTTGGTTCATGACCTTGCCTATTACTGGCCACAATACACTCCAATATCATCACCTGCTGATTATGATCTAACACTTTTCACTGTCTCAAAAAGCACTGGTCATGCAGGAATGCGCATAGGGTGGGCTCTTGTCAAAGACAAAGAGGTAGCAAAGAAAATGACTAAATTCATAGAGCTGAACACAATAGGAGTCTCAAAGGATTCACAACTCAGGGCAGCTAAGGTTTTAAGGGCAGTTTCTGACAGCTCCGAACAAGGAAACTCCCAAGAGGATGAGTCATTTTTCAAGTTCAACCACAAGCTCATGTCAAACAGGTGGAAGCAACTGAGAGTTGTAGTGGACCGTAGTGGATTGTTCAGTTTGCCCAAATTTTCCCCTGCATTCTGCACCTTTTTCAATCAGTTGTTGGAGCCTCAACCAGCTTTTGTGTGGTTAAAGTGTGAGGGAAATGTGGAAGATTGCGAAAGCTTCCTTCGAGCACACAACATCATAACAAGAAGTGGAACGCAGTTTGGGGTTGGCCCAAAATATGTAAGAATTAGTATGTTAGATACTGATGAAAATTTTACACAGTTTCTGGACAGACTCTCTTCAATACAGGCTAGATAG 1581 0.4428 MKMTKLPSLFSLRHLLVLSLALNVSFILRMVYEGDHRYCLGKERAGEHNNIHKSRMLISSSSTSSFSNSTCPDRTTGGGSRNRVINLDHWKHRKEVGGVICPMRTLHEDTLSAVTIRLLWKCSLGCLSVIRFLQLLAAPIALSKWRSIHLQRFFVVFYPLAVHGSHCCSGDPTVYEKFWRQRGDKTTIIIPGWQSMSYFSDVSNICWFLEPEFAKEVVRLHKVVGNAVTEGRHIVVGTGSSQLFLAALYALSPPDSPQPVSVVCASPYYSSYPSMTDCLKSGLYKWAGDAESFDKDGPYIELVTSPNNPDGHVRRSKVNRSQGLLVHDLAYYWPQYTPISSPADYDLTLFTVSKSTGHAGMRIGWALVKDKEVAKKMTKFIELNTIGVSKDSQLRAAKVLRAVSDSSEQGNSQEDESFFKFNHKLMSNRWKQLRVVVDRSGLFSLPKFSPAFCTFFNQLLEPQPAFVWLKCEGNVEDCESFLRAHNIITRSGTQFGVGPKYVRISMLDTDENFTQFLDRLSSIQAR. 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03000 526 CDD AAT_like 211 520 - -
Seca4g03000 526 MobiDBLite consensus disorder prediction 61 80 - -
Seca4g03000 526 Gene3D - 162 205 IPR037029 GO:0016846
Seca4g03000 526 SUPERFAMILY PLP-dependent transferases 169 522 IPR015424 -
Seca4g03000 526 Gene3D Aspartate Aminotransferase, domain 1 416 524 IPR015422 GO:0003824
Seca4g03000 526 Gene3D - 210 412 IPR015421 GO:0003824
Seca4g03000 526 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 183 522 - -
Seca4g03000 526 Pfam Allinase 169 523 IPR006948 GO:0016846
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03000 Seca-Chr4 51470364 51476148 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03000 K16903 - gmx:100820582 651.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03000 4 51470364 51476148 Seca4g03000 4 51470364 51476148 ECH
Seca12g01601 12 17295182 17303719 Seca4g03000 4 51470364 51476148 PCT