Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01601 ATGGCTAAGCTTCCAACTATGTTCTCCTTGAGGCACTTGCTTGTGTTGTCACTGGCCTTGAATGTTAGCTTGATCCTGAGAATGGTGTACGAAAGTGAAGAAGGCAGCGACAGCTTTTGCTTGAAGAAAACAGTGATGTCTTCTGGTGTTGAAGAGGGCCATATCATCCACAAGTCTCGTTTGGCTATATCCCCTGCTTCATCTTTTGCTAATTCTACTCTCACAGATCATCCTGGAGGCAGGGACAGAGTAATCAACCTGGACCATGGAGATCCAACAATGTATGAAAGATATTGGCGAAGAATGGGTGAGAAGACCACAATCATAATTCCTGGATGGCAATCAACAAGCTATTTTTCAGATGTAACAAACATTTGTTGGTTTATGGAACCTGAGTTTGAGAAGGAAGTGGTGAGGTTACACAGAGTGGTGGGAAATGCAGTGACAGAAGGTCGCCATGTTGTTGTTGGGACAGGTTCCTCTCAGCTAATTCTGGCTGCTCTTTATGCTCTGTCCTCTCCTGAATCTGATGAGCCAATTAGTGTTGTATCTGCCGCACCCTATTACTCGTCCTATCCATTAATGGCAGATTACCAGAAATCAGGACTTTACAAATGGGCTGGTGATGCAGAGAGTTTTGAAAAAAATGGTCCTTACATTGAGTTGGTCACTTCTCCCAACAACCCCGATGGATCTGAAAGGCGATCAGTGGTCAACAAAAGCCAAGGACTACTGATTCATGACCTTGCATATTACTGGCCTCAATACACACCAATATCATCCCCCTCTGATTATGATCTTACACTTTTCACTGTCTCGAAAAGCACTGGTCATGCAGGGATGCGCATAGGGTGGGCTCTTGTGAAAGATCAAGAGGTAGCAAAGAAAATGACTAAATTCATAGAGCTAAGTACAATTGGGGTCTCGAAGGATTCTCAACTCAGAGCTGCCAAGGTTTTGAAGACTGTGTCTGATAGCTGTGAACAAGAAAACTTCCATGATGGGGAATCATTTTTCAAGTACAGCTACAAGATCATGGAGCAAAGGTGGAAGCTACTTAGAGCAGCAGTTGAAGGTGGTGGTTTGTTCAGTTTGCCCAAATTTTCTCCTTCATTCTGCACCTTTTTTGGTCAGGAGACAGAGTCCCAACCAGGTATTCACAAATTATATGATGCATGTACACAAGTAGATTTTCATGTCTAG 1203 0.4347 MAKLPTMFSLRHLLVLSLALNVSLILRMVYESEEGSDSFCLKKTVMSSGVEEGHIIHKSRLAISPASSFANSTLTDHPGGRDRVINLDHGDPTMYERYWRRMGEKTTIIIPGWQSTSYFSDVTNICWFMEPEFEKEVVRLHRVVGNAVTEGRHVVVGTGSSQLILAALYALSSPESDEPISVVSAAPYYSSYPLMADYQKSGLYKWAGDAESFEKNGPYIELVTSPNNPDGSERRSVVNKSQGLLIHDLAYYWPQYTPISSPSDYDLTLFTVSKSTGHAGMRIGWALVKDQEVAKKMTKFIELSTIGVSKDSQLRAAKVLKTVSDSCEQENFHDGESFFKYSYKIMEQRWKLLRAAVEGGGLFSLPKFSPSFCTFFGQETESQPGIHKLYDACTQVDFHV. 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01601 400 Gene3D - 71 125 IPR037029 GO:0016846
Seca12g01601 400 Gene3D Aspartate Aminotransferase, domain 1 336 390 IPR015422 GO:0003824
Seca12g01601 400 Gene3D - 130 332 IPR015421 GO:0003824
Seca12g01601 400 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 87 377 - -
Seca12g01601 400 SUPERFAMILY PLP-dependent transferases 78 378 IPR015424 -
Seca12g01601 400 CDD AAT_like 131 376 - -
Seca12g01601 400 Pfam Allinase 85 385 IPR006948 GO:0016846
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01601 Seca-Chr12 17295182 17303719 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01601 K16903 - gmx:100777098 605.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01601 12 17295182 17303719 Seca12g01601 12 17295182 17303719 ECH
Seca12g01601 12 17295182 17303719 Seca4g03000 4 51470364 51476148 PCT