LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca4g02992	ATGGCCTCAGCTTCGGAAAAGGCGACGCCACCAACGTCTTCCTCTTGCTGTCCCCCCGGCGACTCTGCCCGCTTAGCCGCCGCCGCCGCGCCGCAAGAATGGATCGACGATCGCCGCACCAATAAGGTCTCCTTGATTCGCCCACTCGATTCGCTCCCCGAATCTTCCACCAATGCCCCTACTGCTAAGGGAGTTGCTGCTATGCCAAGGGCCCAGTCAAGCCACCCTTTGGACCCTTTAACTGCCGCTGAAATCTCTGTGGCTGTGGCAACTGTGAGGGCTGCGGGAGCCACTCCTGAGCTTAGAGACAGTATGCGCTTCATTGAAGTAGTTTTGCTGGAACCAGATAAACATGTTGTCGCACTGGCTGATGCTTATTTCTTTCCACCTTTCCAACCATCATTACTTCCTAGAACTAAAGGAGGGCCTGTAATTCCCACTAAACTTCCTCCTAGATGTGCTAGACTCGTGGTTTACAATAAGAAATCAAATGAGACAGCTGTATGGATTGTTGAATTATCACAAGTACATGCAGTAACTCGAGGTGGTCATCACCGAGGAAAAGTAATTTCATCACATGTTATTCCTGATGTGCAGCCTCCAATGGATGCTGTGGAATATGCAGAATGTGAGGCTGTTGTTAAAAGTTTTCCCCCATTTATAGAGGCTATGAAGAAAAGGGGTATTGAGGACATGGACCTTGTAATGGTTGATCCCTGGTGTGTTGGTTATCACAGTGAAGCTGATGCTCCTGGTCGAAGACTTGCTAAACCGCTCATATTTTGTCGATCTGAGAGTGACTGCCCTATGGAAAATGGCTATGCCCGCCCAGTTGAGGGCATCTTTGTTCTTGTTGATATGCAAAACATGGTGGTGATAGAGTTTGAAGATCGAAAACTTGTTCCTCTGCCTCCGGTTGATCCCTTGAGGAATTATACTCCTGGAGAAAGCAGGGGTGGCTCTGATAGAAGTGATGTAAAACCCTTGCAAATTATTCAGCCTGAAGGTCCAAGCTTTCGTGTGAATGGGTATTATGTTGAATGGCAGAAGTGGAATTTTCGTATTGGATTCACACCCAAGGAAGGTTTGGTTATATATTCTGTTGCATATGTTGATGGTAGTCGAGGACGAAGGCCTGTTGCTCATAGGCTGAGTTTTGTGGAGATGGTTGTACCCTATGGAGATCCAAATGACCCCCATTACAGAAAGAATGCTTTTGATGCTGGAGAAGATGGCTTGGGAAAAAATGCTCATTCCCTCAAGAAGGGATGTGATTGTTTGGGTTACATCAAATATTTTGATGCTCACTTCACAAATTTCACTGGTGGAGTGGAAACCATTGAAAATTGTGTATGTTTGCATGAAGAGGATCATGGGATTCTCTGGAAGCATCAAGACTGGAGAACTGGCTTAGCTGAAGTTCGAAGGTCTAGAAGACTTTCAGTTTCTTTTATATGTACTGTGGCTAACTATGAATATGGATTTTTTTGGCACTTTTATCAGGCAAGTAGGGATGGAAGGATTGAAGCTGAAGTCAAGCTAACTGGAATTCTCAGCTTAGGAGCCTTGATGCCTGGAGAGTTTCGAAAATATGGAACCATGATTGCACCAGGTCTATATGCTCCAGTTCATCAGCACTTTTTTGTTGCTCGCATGGACATGTCTGTTGATTCTAAACCTGGTGAAGCTCTGAATCAGGTTGTGGAGCTCAATATGAAAGTTGAGGAACCTGGTGAGAATAATGTTCACAATAATGCATTCTATGCTGAAGAGACTCTGCTCAGATCTGAATTGGAAGCCATGCGAGATTGCAATCCTTTGACTGCTCGACATTGGATTGTAAGAAACACTAGAACTTGCAATAGAACTGGACAATTGACAGGCTACAAGCTGGTACCTGGCTCAAACTGCTTGCCATTGGCAGGTTCTGAGGCAAAGTTTTTAAGAAGAGCTGCCTTCTTGAAGCATAATCTTTGGGTAACACCATATTCACGTGGTGAGGTGTTTCCTGGAGGAGAATTTCCTAATCAAAATCCACGTGTTGGTGAAGGTTTAGCTACATGGGTTAAACAGAACCGATCTTTGGAAGAAACTAATATAGTCCTTTGGTATGTGTTTGGAATCACACACGTTCCTCGTCTAGAAGACTGGCCTGTTATGCCAGCGGAGCGCATTGGTTTTATGCTCATGCCTCATGGATTCTTCAATTGTTCCCCTGCTGTAGATGTCCCGCCTAATGCTTGTGAAGTGGATTCTAAAGATAATGACATTAAGGATAATGGTGCTTCTAAGCCAATTCAGAGTGGGTTAACGGCAAAGCTTTAG	2325	0.4495	MASASEKATPPTSSSCCPPGDSARLAAAAAPQEWIDDRRTNKVSLIRPLDSLPESSTNAPTAKGVAAMPRAQSSHPLDPLTAAEISVAVATVRAAGATPELRDSMRFIEVVLLEPDKHVVALADAYFFPPFQPSLLPRTKGGPVIPTKLPPRCARLVVYNKKSNETAVWIVELSQVHAVTRGGHHRGKVISSHVIPDVQPPMDAVEYAECEAVVKSFPPFIEAMKKRGIEDMDLVMVDPWCVGYHSEADAPGRRLAKPLIFCRSESDCPMENGYARPVEGIFVLVDMQNMVVIEFEDRKLVPLPPVDPLRNYTPGESRGGSDRSDVKPLQIIQPEGPSFRVNGYYVEWQKWNFRIGFTPKEGLVIYSVAYVDGSRGRRPVAHRLSFVEMVVPYGDPNDPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFTGGVETIENCVCLHEEDHGILWKHQDWRTGLAEVRRSRRLSVSFICTVANYEYGFFWHFYQASRDGRIEAEVKLTGILSLGALMPGEFRKYGTMIAPGLYAPVHQHFFVARMDMSVDSKPGEALNQVVELNMKVEEPGENNVHNNAFYAEETLLRSELEAMRDCNPLTARHWIVRNTRTCNRTGQLTGYKLVPGSNCLPLAGSEAKFLRRAAFLKHNLWVTPYSRGEVFPGGEFPNQNPRVGEGLATWVKQNRSLEETNIVLWYVFGITHVPRLEDWPVMPAERIGFMLMPHGFFNCSPAVDVPPNACEVDSKDNDIKDNGASKPIQSGLTAKL.	775

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca4g02992	774	Pfam	Copper amine oxidase, N3 domain	200	303	IPR015802	GO:0005507\|GO:0008131\|GO:0009308\|GO:0048038
	Seca4g02992	774	SUPERFAMILY	Amine oxidase N-terminal region	73	201	IPR016182	GO:0005507\|GO:0008131\|GO:0009308\|GO:0048038
	Seca4g02992	774	Gene3D	-	59	202	-	-
	Seca4g02992	774	PANTHER	COPPER AMINE OXIDASE	70	755	IPR000269	GO:0005507\|GO:0008131\|GO:0009308\|GO:0048038
	Seca4g02992	774	MobiDBLite	consensus disorder prediction	1	19	-	-
	Seca4g02992	774	Gene3D	Copper amine oxidase, catalytic domain	316	745	IPR036460	GO:0005507\|GO:0008131\|GO:0009308\|GO:0048038
	Seca4g02992	774	FunFam	Amine oxidase	205	308	-	-
	Seca4g02992	774	MobiDBLite	consensus disorder prediction	752	774	-	-
	Seca4g02992	774	MobiDBLite	consensus disorder prediction	1	33	-	-
	Seca4g02992	774	FunFam	Amine oxidase	319	747	-	-
	Seca4g02992	774	Pfam	Copper amine oxidase, enzyme domain	329	740	IPR015798	GO:0005507\|GO:0008131\|GO:0009308\|GO:0048038
	Seca4g02992	774	Pfam	Copper amine oxidase, N2 domain	75	173	IPR015800	GO:0005507\|GO:0008131\|GO:0009308\|GO:0048038
	Seca4g02992	774	SUPERFAMILY	Amine oxidase N-terminal region	199	316	IPR016182	GO:0005507\|GO:0008131\|GO:0009308\|GO:0048038
	Seca4g02992	774	SUPERFAMILY	Amine oxidase catalytic domain	323	745	IPR036460	GO:0005507\|GO:0008131\|GO:0009308\|GO:0048038
	Seca4g02992	774	Gene3D	-	205	307	-	-
	Seca4g02992	774	FunFam	Amine oxidase	59	202	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca4g02992	Seca-Chr4	51282307	51290240	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca4g02992	K00276		-	gmx:100798722	1431

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Seca4g02992	4	51282307	51290240	Seca4g02992	4	51282307	51290240	ECH
	Seca12g01612	12	17463368	17465779	Seca4g02992	4	51282307	51290240	PCT