Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01612 ATGGTGTTGTCTGGGATGATGGGAAACCCTAACCCTAACCCTAAGGTTGAAGAGGAAAAGCGCCTCGAAGAGGAGTTATCGATTCCGATCCTGGTTGGAGACAGAGTGATAAAACTGGCTGAGGAAGCAGAGTCATCCAAGGTTGAGTGCTTGGAACTCGCGAAGAAGGTGCAAGTTCTCTGCAACAACTTGCGTGCTGTTGTGAGGGTTTTGTCCGGGAACCAATCGTTGAACGAGAGGCCGATCCGTCGCATGGTTGCTGACGTGTCGAAGAATCTGGACAAGACGCTTTCACTTGTGCGTAAGTGCAAGAAGCAAGGCGGGGTGCTCCGGCAGGTCTTGTCGATGAGAAGCACCGGTGACTTCAGGAAGGTCTGGAACCTTCTGGAATCTTCCAACGGTGACATGGTGTGGCTTTTAAGTATCTTTGAGTCCAAGGGGACCAATTTATCACTCCCTCCAATTGCCAGTAACGACCCCATCTTGGCTTGGGTTTGGACCTACACCTATACTCTTCAATTGGGTAACCCTAAGGACCGTGCTGATGCCGCCATGGAACTTGGTTCCCTTGCCAAGGATAATGACCGTAACAAGTTCATTATCATGGAGGAAGGTGGGGTTTTGCCTCTCCTCAGGCTTCTCAAGGAAGCTTCTTCCCCTGAGGCTCAAGTTGCTGCTGCTAATGCTCTTGTCAATATAGCCTCAAACCAAATCAGGGTGGTTAGTTTTCTAGTTGCCAACCTAGCTATCCCTATCCTTGTTAAGGTTCTCTCTGATGCCCCCTTCAGAGTTCGTGTTTCCGTTGCCAATTTGGTTTCCACTATGGCTGACCAAGATGACATTGTTAGGGAGGAGTTTGTGAGGGCCAATGTGACTAGACCCCTTGTGTCTCTGTTGTCCATGGATACTGTCCTTGCTGACCCCATGGCTGCTCGCAACAGCATTCATTCCTTGGTTCTCAATTTGTCTGAGGCCAATTCTGATGCCGGCAGCAGAGGGGGAAACCCCCAACAAAGGGAGGGAGAGAGCCCTGAGTTAAGGAATCGTGTCAAAGTCAGTTGTGCTAAGGCTCTGTGGAAACTCTCTCAAGGGTGTCTTATGACTTGCAAGAAGATTACCGAGACGAAAGGTTTGCTTTGTCTGGCTAAGATTATTGAATCTGAGAGTGGAGAATTGCGGCTTAACTGTCTCATGGCTGTCATGGAGATTGCCACGGTGGCAGAGTCCAATGCAGATCTTAGAAGAGCTGCGTTTAAGCCCACTGCCCCTGCGGCAAAGGCAGTTTTGGACCAGCTTTTGAGAGTGGTTCGCGAGGAGAGTGATCCTGACTTGCTGATTCCTGCCATTAAATCAATTGGATCCTTGGCCAGAAACTTCCCTGGAAAGGTTCCTCAAGTTCTTGGTCCTTTAGTTGCCCAGCTTGGTAATAAGGATGTAGATGTAGCAAGTGAAGTTGCTATTGCATTAGTAAAGTTTGTGTGCTCGGATAATTACAACTGTGTTGATCATTCTAAGGCAATACTTGAGCTTGATGGAATTCCCAAGCTAATGAGTTTGCTGCAGATAAATAATCATCAACAAGTGTATGGCTTGAAGTTACTTTGTTACCTTGCCTTAAATGTGGGCAACAGTAAGGTTCTTGAGCAAGAACGTGCCTTGAGCACTCTAGAGAAGCATGCTCGTCCTGTTCTAGCTCAACATCCTGATTTGAAGGAACTGTTTGCAAAGGCCATACACCACCTCACTCTTTATCAGCCGGGAGCTCAATTGCACAGACAGCCCTTGGGGCTATAA 1794 0.481 MVLSGMMGNPNPNPKVEEEKRLEEELSIPILVGDRVIKLAEEAESSKVECLELAKKVQVLCNNLRAVVRVLSGNQSLNERPIRRMVADVSKNLDKTLSLVRKCKKQGGVLRQVLSMRSTGDFRKVWNLLESSNGDMVWLLSIFESKGTNLSLPPIASNDPILAWVWTYTYTLQLGNPKDRADAAMELGSLAKDNDRNKFIIMEEGGVLPLLRLLKEASSPEAQVAAANALVNIASNQIRVVSFLVANLAIPILVKVLSDAPFRVRVSVANLVSTMADQDDIVREEFVRANVTRPLVSLLSMDTVLADPMAARNSIHSLVLNLSEANSDAGSRGGNPQQREGESPELRNRVKVSCAKALWKLSQGCLMTCKKITETKGLLCLAKIIESESGELRLNCLMAVMEIATVAESNADLRRAAFKPTAPAAKAVLDQLLRVVREESDPDLLIPAIKSIGSLARNFPGKVPQVLGPLVAQLGNKDVDVASEVAIALVKFVCSDNYNCVDHSKAILELDGIPKLMSLLQINNHQQVYGLKLLCYLALNVGNSKVLEQERALSTLEKHARPVLAQHPDLKELFAKAIHHLTLYQPGAQLHRQPLGL. 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01612 597 Gene3D - 169 340 IPR011989 -
Seca12g01612 597 Gene3D - 24 142 IPR036537 GO:0007166
Seca12g01612 597 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 205 237 IPR000225 GO:0005515
Seca12g01612 597 SUPERFAMILY ARM repeat 175 561 IPR016024 -
Seca12g01612 597 Gene3D - 341 592 IPR011989 -
Seca12g01612 597 Pfam Armadillo/beta-catenin-like repeat 194 235 IPR000225 GO:0005515
Seca12g01612 597 PANTHER ARMADILLO REPEAT ONLY 4 21 585 - -
Seca12g01612 597 MobiDBLite consensus disorder prediction 325 347 - -
Seca12g01612 597 SMART arm_5 279 363 IPR000225 GO:0005515
Seca12g01612 597 SMART arm_5 500 539 IPR000225 GO:0005515
Seca12g01612 597 SMART arm_5 193 235 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01612 Seca-Chr12 17463368 17465779 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01612 - - gmx:100813824 922.154
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01612 12 17463368 17465779 Seca12g01612 12 17463368 17465779 ECH
Seca12g01612 12 17463368 17465779 Seca4g02992 4 51282307 51290240 PCT