Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02985 ATGGATCCCAACCCAGGAACCTTTCCGATTCTCTCCTATGTCATGTCCCGCCTCCCTTCCTTCACACCCAAGCCCACCGCCACGCCTTCCGATTCCGACCAATTCGACATCGAACAACCACGCGCTCCGCCGACCTCGGAAATCGTCGGCCAAATGCCTCACTTGGCGGACCCGGAACTCCTGGCATCCATGGGCCGGGCCATCACGGACGTGTGGCAGGCCCGTTCCGTCCTGAACCTGATCGGCGAGCGGCCCACCCACGAAGAAGTGGACCTTGCTAGGGCTAAGCTGGCGGACATGGAAGCCCAACTCTCTCGACAGCTGGAAGAGATCGTGCTTCAGGCGAGGCCTCCGGAGATGGATATCCACGGGTGGCGAGCCCACCAGGCTGAGAAGGAGAAACAGTGCAGGGAAGAGGCGGAAAAGGAGAAGCGCGTTTGGAAATCGGTGATTCAACTTGACGAGATGCACGAGGGCTACGAGAAGCTTCTCAAGGACGCTGAGAAGCGCTTGGAAAGAATGTATGAGTCTAAGGACGGCGGCGATGATGGAGGAGACAGGGACGGTGGTGGTGATGAGGTGAACGAAGAGGTTGTGGGGATTCTTCAGGAAGCATATGGCAAAGGAATGGAGCGAATCAATCTTTCCGGCCGGAGATTGAAGCTCTTGCCGGAGGCATTTGGCCGGATTCATGGCTTGGTGGTGCTTGATATTTCAAACAACGAGCTTTTGGCAATTCCTGACTCAATAGCTGGATTGCAAAATCTCGAGGAGCTTAATCTCTCTTCAAATCTTTTGGAATCACTGCCAGATTCAATTGGGTTGTCACAAAAGTTGAAATTGCTCAATGTTTCTGGAAACAAACTGACTGCCCTTCCTGATTCCATCTGTCAGTGCAGGTCGTTGGTGGAGCTGGATGTAAGCTTTAACAGCCTGTCATATTTGCCAACAAATATTGGATATGAATTACCAAACTTGCAGAAACTCATGATTCAATTGAACAAAATTCGATCTCTTCCCTCATCTGTTTGTGAATTGAAGTCCTTGCGCTATTTGGATGCTCACTTTAATGAGCTACATGGGCTTCCAATTGCAATTGGGAGACTGACTAATCTGGAAGTTCTCAATCTGAGCAGTAACTTCACTGACCTTAAAGAACTTCCAGAGACATTTGGTGATTTGACAAACCTCAGGGAATTGGATCTCAGCAATAATCAGATTCATGCACTTCCTGATACATTTGGTCGCCTTGAAAACTTGACCAAACTAAACTTAGAGCAGAATCCTGTTGAATTGCCACCAATGGAGATTGTAAATCAAGGGGTCCAAGCCATAAAGACTTTTATGGCCAAGAGGTGGTTCGATATATTGTTAGAGGAAGAAAGGAAAAGCAGTCAAGAAATGCAAGAACAAGGAGAGGGTGGGTGGTTAACACGAAGCACCTCCTGGTTGAAGAATGTTTCTGGGAATGTAATTGGGTATCTTGGAACTGCCGTTGGATCTCCTATATCACCCACACCCAGGTCTCCCAGAGATGCTTATCTTGATCAGCAGCTATGA 1560 0.4891 MDPNPGTFPILSYVMSRLPSFTPKPTATPSDSDQFDIEQPRAPPTSEIVGQMPHLADPELLASMGRAITDVWQARSVLNLIGERPTHEEVDLARAKLADMEAQLSRQLEEIVLQARPPEMDIHGWRAHQAEKEKQCREEAEKEKRVWKSVIQLDEMHEGYEKLLKDAEKRLERMYESKDGGDDGGDRDGGGDEVNEEVVGILQEAYGKGMERINLSGRRLKLLPEAFGRIHGLVVLDISNNELLAIPDSIAGLQNLEELNLSSNLLESLPDSIGLSQKLKLLNVSGNKLTALPDSICQCRSLVELDVSFNSLSYLPTNIGYELPNLQKLMIQLNKIRSLPSSVCELKSLRYLDAHFNELHGLPIAIGRLTNLEVLNLSSNFTDLKELPETFGDLTNLRELDLSNNQIHALPDTFGRLENLTKLNLEQNPVELPPMEIVNQGVQAIKTFMAKRWFDILLEEERKSSQEMQEQGEGGWLTRSTSWLKNVSGNVIGYLGTAVGSPISPTPRSPRDAYLDQQL. 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02985 519 Gene3D Ribonuclease Inhibitor 335 450 IPR032675 -
Seca4g02985 519 ProSiteProfiles Leucine-rich repeat profile. 396 417 IPR001611 GO:0005515
Seca4g02985 519 SMART LRR_typ_2 277 299 IPR003591 -
Seca4g02985 519 SMART LRR_typ_2 300 322 IPR003591 -
Seca4g02985 519 SMART LRR_typ_2 394 417 IPR003591 -
Seca4g02985 519 SMART LRR_typ_2 230 252 IPR003591 -
Seca4g02985 519 SMART LRR_typ_2 323 346 IPR003591 -
Seca4g02985 519 SMART LRR_typ_2 253 276 IPR003591 -
Seca4g02985 519 SMART LRR_typ_2 369 393 IPR003591 -
Seca4g02985 519 PRINTS Leucine-rich repeat signature 394 407 - -
Seca4g02985 519 PRINTS Leucine-rich repeat signature 233 246 - -
Seca4g02985 519 ProSiteProfiles Leucine-rich repeat profile. 255 276 IPR001611 GO:0005515
Seca4g02985 519 FunFam Plant intracellular Ras-group-related LRR protein 9 132 314 - -
Seca4g02985 519 Pfam Leucine rich repeat 371 429 IPR001611 GO:0005515
Seca4g02985 519 Pfam Leucine rich repeat 255 312 IPR001611 GO:0005515
Seca4g02985 519 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 57 323 425 - -
Seca4g02985 519 SMART LRR_bac_2 394 413 - -
Seca4g02985 519 SMART LRR_bac_2 369 390 - -
Seca4g02985 519 SMART LRR_bac_2 276 295 - -
Seca4g02985 519 SMART LRR_bac_2 299 318 - -
Seca4g02985 519 SMART LRR_bac_2 230 249 - -
Seca4g02985 519 SMART LRR_bac_2 253 272 - -
Seca4g02985 519 SMART LRR_bac_2 346 365 - -
Seca4g02985 519 SMART LRR_bac_2 323 342 - -
Seca4g02985 519 MobiDBLite consensus disorder prediction 19 35 - -
Seca4g02985 519 Coils Coil 150 177 - -
Seca4g02985 519 MobiDBLite consensus disorder prediction 19 50 - -
Seca4g02985 519 Gene3D Ribonuclease Inhibitor 205 334 IPR032675 -
Seca4g02985 519 Coils Coil 90 110 - -
Seca4g02985 519 SUPERFAMILY L domain-like 209 435 - -
Seca4g02985 519 ProSiteProfiles Leucine-rich repeat profile. 278 299 IPR001611 GO:0005515
Seca4g02985 519 MobiDBLite consensus disorder prediction 499 519 - -
Seca4g02985 519 FunFam Plant intracellular Ras-group-related LRR protein 2 318 491 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02985 Seca-Chr4 51131287 51136082 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02985 223 446 Receptor kinase-like Gene Family AT3G51740 32.035 1.84e-17 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02985 - - gmx:100803823 836.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02985 4 51131287 51136082 Seca4g02985 4 51131287 51136082 ECH
Seca12g01624 12 17557191 17560682 Seca4g02985 4 51131287 51136082 PCT