Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01624 ATGGATCCCCACCCAGGAAACTTCCCCATTCTCTCCTACGTCATGTCCCGTCTCCCTTCCTTCGGCCCCAGAACCCCCACCCCCACCGGCACCAGCACTTCCCATTCCCAAATCGACCTGGAACAACCGCCACCCGCGGACCCTTCATCATCATCATCATCTTCTTCAATCGTAGACAAAATGCCGCATCTGAAGGACCCAAAACTGTTGGCCGCCATGACCCGGGCCATCTCGGACGTCTCCCAGGCCCGATCCGTTTTGAAGCTGATCGGCGAGCAGCCCACCCACGAGGAGGTGGACAATGCGAAGGCCAAGCTGGCAGACCTCGAAGCCCATTTGTCTCGTCAATTGGAAGAGATCGTCGTCCTCCAAAGGCCCCCGGAGATTGACGAACAACAATGGCGGGTTCACCTCACCGAAAGAGAGAAGCAGTGTAGGGAATCCGCGGAGAAAGAGAAGCGCGTTTGGAAGTCGCTGATACAGCTGGACGAGATGCATGACTCTTACGAGAAGCTCCTCAAGGATGCTGAGAAGCGATTGGTGAAGATTTACGAGGGTGAGGATGACAACAACAACAACGACGACGATGACAGCGAGGTGGGTGGGGAAGAAAAGGTGAATGAACACGTTGCGGGAATGCTGCAAGAGGCGAGTGGAAAAGGAGTGGAGCGAGTGGATCTTTCGGGGCAGCATCTGAGGAAGCTTCCTGAGGCCTTTGGCCGCGTTACTTCCTTGGTGGTGCTCAATCTCTCCACCAATCAGCTTTCGGTGATTCCTGAGTCAATAGGTGGGTTGCAAAATCTTGAAGAGCTTAATATCTCTGCCAATATTTTGGAGTCACTGCCAGATTCAATTGGCTTGTTACAAAAGCTGAAATTCCTCAATGTCTCTGGAAATAAGTTGACTGCCCTTCCTGATTCCATCAGTCAATGCAGGTCATTGGTGGAGCTTGATGCGAGCTTTAACAGTCTGGCATATTTGCCAACAAACATTGGATATGAATTACAGAATTTACAGAAGCTCTTGATTCAATTAAACAAGATACGATCCCTTCCCTCATCTGTTTGTGAGATGAAGTCCTTGCGCTATCTGGATGCTCACTTCAATGAGCTACATGGGCTTCCTATTGCGATTGGGAGATTGATTAATCTTGAATTTCTCAACCTGAGCAGTAACTTCAGTGACCTTATAGAACTTCCAGAGACATTTGGTGATCTGATTAGCCTCAGGGAATTGGATCTCAGCAACAATCAAATTCATGCACTTCCTGATACATTTGGTCGCCTTGATAATTTGACCAAGCTAAACTTGGAGCAAAATCCTCTTGAAGTGCCACCTATGGAGATTGTAAATCAAGGGGTCCAAGCCATAAAGTCTTTCATGGCCAAGAGGTGGATTGATATATTGGCAGAGGATGAAAGGAAAAGCATGCAGGAAATGCAAGAACAAGGACAGAATGGCTGGTTAACACGAAGCACCTCCTGGTTGAAGAATGTTTCCGTAAATGTAACAGACTATATCGGAACTACCGTTTTGTCCCCAAGATCTCCCAAAGATGCTTATCTTGATCAGCAGCTATGA 1581 0.4839 MDPHPGNFPILSYVMSRLPSFGPRTPTPTGTSTSHSQIDLEQPPPADPSSSSSSSSIVDKMPHLKDPKLLAAMTRAISDVSQARSVLKLIGEQPTHEEVDNAKAKLADLEAHLSRQLEEIVVLQRPPEIDEQQWRVHLTEREKQCRESAEKEKRVWKSLIQLDEMHDSYEKLLKDAEKRLVKIYEGEDDNNNNDDDDSEVGGEEKVNEHVAGMLQEASGKGVERVDLSGQHLRKLPEAFGRVTSLVVLNLSTNQLSVIPESIGGLQNLEELNISANILESLPDSIGLLQKLKFLNVSGNKLTALPDSISQCRSLVELDASFNSLAYLPTNIGYELQNLQKLLIQLNKIRSLPSSVCEMKSLRYLDAHFNELHGLPIAIGRLINLEFLNLSSNFSDLIELPETFGDLISLRELDLSNNQIHALPDTFGRLDNLTKLNLEQNPLEVPPMEIVNQGVQAIKSFMAKRWIDILAEDERKSMQEMQEQGQNGWLTRSTSWLKNVSVNVTDYIGTTVLSPRSPKDAYLDQQL. 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01624 526 Pfam Leucine rich repeat 400 442 IPR001611 GO:0005515
Seca12g01624 526 Pfam Leucine rich repeat 267 324 IPR001611 GO:0005515
Seca12g01624 526 SMART LRR_bac_2 335 354 - -
Seca12g01624 526 SMART LRR_bac_2 265 284 - -
Seca12g01624 526 SMART LRR_bac_2 242 261 - -
Seca12g01624 526 SMART LRR_bac_2 358 377 - -
Seca12g01624 526 SMART LRR_bac_2 406 425 - -
Seca12g01624 526 SMART LRR_bac_2 381 402 - -
Seca12g01624 526 SMART LRR_bac_2 311 330 - -
Seca12g01624 526 SMART LRR_bac_2 288 307 - -
Seca12g01624 526 SUPERFAMILY L domain-like 220 442 - -
Seca12g01624 526 PANTHER LEUCINE-RICH REPEAT-CONTAINING 293 455 - -
Seca12g01624 526 ProSiteProfiles Leucine-rich repeat profile. 408 429 IPR001611 GO:0005515
Seca12g01624 526 Coils Coil 159 179 - -
Seca12g01624 526 ProSiteProfiles Leucine-rich repeat profile. 290 311 IPR001611 GO:0005515
Seca12g01624 526 FunFam Plant intracellular Ras-group-related LRR protein 9 141 326 - -
Seca12g01624 526 Coils Coil 99 119 - -
Seca12g01624 526 MobiDBLite consensus disorder prediction 19 60 - -
Seca12g01624 526 SMART LRR_typ_2 335 358 IPR003591 -
Seca12g01624 526 SMART LRR_typ_2 429 452 IPR003591 -
Seca12g01624 526 SMART LRR_typ_2 288 311 IPR003591 -
Seca12g01624 526 SMART LRR_typ_2 242 264 IPR003591 -
Seca12g01624 526 SMART LRR_typ_2 265 287 IPR003591 -
Seca12g01624 526 SMART LRR_typ_2 312 334 IPR003591 -
Seca12g01624 526 SMART LRR_typ_2 381 405 IPR003591 -
Seca12g01624 526 SMART LRR_typ_2 406 428 IPR003591 -
Seca12g01624 526 MobiDBLite consensus disorder prediction 184 203 - -
Seca12g01624 526 FunFam Plant intracellular Ras-group-related LRR protein 2 330 503 - -
Seca12g01624 526 MobiDBLite consensus disorder prediction 22 59 - -
Seca12g01624 526 ProSiteProfiles Leucine-rich repeat profile. 267 288 IPR001611 GO:0005515
Seca12g01624 526 Gene3D Ribonuclease Inhibitor 130 326 IPR032675 -
Seca12g01624 526 Gene3D Ribonuclease Inhibitor 327 462 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01624 Seca-Chr12 17557191 17560682 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01624 225 447 Receptor kinase-like Gene Family AT5G56040 30.714 1.48e-13 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01624 - - gmx:100782818 740.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01624 12 17557191 17560682 Seca12g01624 12 17557191 17560682 ECH
Seca12g01624 12 17557191 17560682 Seca4g02985 4 51131287 51136082 PCT