Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02773 ATGGCTGCTGAAGCATATCATCAGGCTATTGGCACTTTGCAATCCCATTCCTATCTCAATAATTGTAATAATCACCGAAAGCTTCGAAACAATCTAGTAAGATTGGTAATAAATGATTTTGTCAGTAGTAATGGCTTGTCAAGGAGAGGAAGTAGCCACTGTGTCCAGAGGAACTGTAGTGTAATTCGATGTTCATCTTCTCAGATATCAGTTGTTGATCCAGTGTCATCCCCTTCAATTAGCAACACTGGTGACACTTACAAGAAATCAAATGAAGCAGCTTTGATCCTGATTCGGCATGGTGAGTCATTATGGAATGAAAAGAATTTGTTCACAGGCTGTGTTGATGTCCCACTAAGCAATAAGGGTATAGATGAGGCGATTGAAGCTGGGAAAAGAATTAGCAGCATTCCTGTTGATGTCATATTTACATCTGCTTTGATTCGTGCACAAATGACAGCCATGCTTGCCATGACCCAGCACCGTCGTAGGAAGGTTCCTGTCATTTTGCACAATGAGAGTGAACAAGCAAGGACATGGAGTCAAATTTTTAGTGAGGATACAAAGAAGCAGTCCATTCCAGTCATAGCATCTTGGCAACTAAATGAAAGAATGTATGGGGAACTACAGGGTCTCAATAAGCAAGAAACAGCAGACAGATATGGGAAAGAACAAGTCCATGAGTGGCGCCGAAGTTATGACATACCTCCTCCAAATGGTGAAAGTTTGGAAATGTGTGCTGAAAGAGCGGTTGCCTATTTCAGAGACCAAATTGAACCTCAACTTTTGTCTGGAAAGAATGTTATGATTGCAGCACATGGGAATTCATTGAGATCCATTATCATGTATCTTGACAAACTAACTTCCCAAGAGGTCATTAGTCTAGAACTGTCAACTGGGATTCCCATGCTTTACATTTTCAAAGAGGGAAGATTCATTAGGAGGGGGAGTCCCTTAGGACCATCTGAAGCTGGAGTTTATGCTTTTACCAAGCATTTGGCTCTTTACAGGCAGAAATTGGATGAGATGTTCCAATAA 1038 0.4114 MAAEAYHQAIGTLQSHSYLNNCNNHRKLRNNLVRLVINDFVSSNGLSRRGSSHCVQRNCSVIRCSSSQISVVDPVSSPSISNTGDTYKKSNEAALILIRHGESLWNEKNLFTGCVDVPLSNKGIDEAIEAGKRISSIPVDVIFTSALIRAQMTAMLAMTQHRRRKVPVILHNESEQARTWSQIFSEDTKKQSIPVIASWQLNERMYGELQGLNKQETADRYGKEQVHEWRRSYDIPPPNGESLEMCAERAVAYFRDQIEPQLLSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIFKEGRFIRRGSPLGPSEAGVYAFTKHLALYRQKLDEMFQ. 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02773 345 Pfam Histidine phosphatase superfamily (branch 1) 184 298 IPR013078 -
Seca4g02773 345 Pfam Histidine phosphatase superfamily (branch 1) 95 170 IPR013078 -
Seca4g02773 345 PANTHER PHOSPHOGLYCERATE MUTASE 85 331 IPR005952 GO:0006096|GO:0016868
Seca4g02773 345 CDD HP_PGM_like 95 319 IPR013078 -
Seca4g02773 345 Hamap 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [gpmA]. 92 319 IPR005952 GO:0006096|GO:0016868
Seca4g02773 345 ProSitePatterns Phosphoglycerate mutase family phosphohistidine signature. 97 106 IPR001345 GO:0003824
Seca4g02773 345 SUPERFAMILY Phosphoglycerate mutase-like 95 311 IPR029033 -
Seca4g02773 345 Gene3D - 85 318 IPR029033 -
Seca4g02773 345 SMART PGAM_5 94 280 IPR013078 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02773 Seca-Chr4 47804306 47808800 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02773 K01834 - gmx:100802621 599.742
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02773 4 47804306 47808800 Seca4g02773 4 47804306 47808800 ECH
Seca8g02035 8 43422366 43427032 Seca4g02773 4 47804306 47808800 PCT