Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02421 ATGGCTAACAATGCAGCTGCCTGTGCTGAGAGAGCAACTAGTGACATGCTCATTGGTCCAGACTGGGCAATCAACATAGAGTTGTGTGATATCATCAATATGGACCCTAGGCAAGCAAAGGATGCATTAAAGATACTTAAGAAGCGTTTAGGCAGTAAAAATCCCAAAACACAGCTGCTGGCTCTTTTTGTACTGGAGACCCTTAGTAAAAATTGTGGTGAAAGTGTATTTCAGCAGATTATTGAGCGGGATGTGTTACATGAAATGGTTAAGATAGTGAAGAAGAAGCCAGACTTAAATGTGAGGGAAAAGATACTGATTTTAATTGATACATGGCAAGAAGCTTTTGGAGGTCCAAATGGAGTTTATCCTCAATACTATGCAGCATATAATGAATTAAAGTCTGCTGGAGTTGAATTTCCACCACGAAATGAGAGTAGCGTGCCATTCTTCACACCTCCTCAAACTCAGCCGATTCATCATTCTGCTGCAGAATTTGATGATGCTGCTATTCAGGCTTCTCTCCAGTCAGATGAATCTGGCCTTAGTTTACCAGAGATTAAAAATGCTCAAGGAATAGCTGATGTATTGATGGAAATGCTTAATGCCTTGAATCCTAAAGACCCTGAGGGTGTGAAGGAGGAAGTGATTGTTGACCTTGTTGACCAGTGCCGTTCTTACCAAAAGCGTGTCATGCTTCTTGTGAACAATACCTCGGATGAGGAGCTTTTAAGTCAGGGATTGGCACTGAATGATAGTCTTCAGCGAGTACTCTGTCAACATGATGATATCGTGAAAGGCACTGCTGATTCAGGTGCAAGAAAAGCAGAAACTTCAGTTCTGCCTCTTGTAAATGTAAACCATGAAGATGATGACTCCGAAGATGATTTTGCTCAACTAGCCCATAGGTCATCCCGAGATACTCATGCACAGAATCGGAAACCAGCCTATGACAAGGCAGAACCAGGGATGATGAACTCACTTATTCCCCCACCACCTGCATCAAGGAAGCCAGTCTACTCTGGCGCTGGCATGGTTGACTATCTTAGTGGTGATGCATACAACACAGAAGGATCTCCTGAAAACCCTGAACCAACTCCATTTGCAGCCCCCCTTCATTCTAGCCCTAATCCTACACCATCAACTATTCCAACACAGTCTTCACCTGGCCCTCATGCTATGAGTACCTCATCTCCAATTTTTAGCAGACAGCCTGTGTATGATGAACCATCTCCTGTGAACATATCTTCAGAGCATCTGCCTCCAGCTCCCTGGGACACCCAATCTCCTGGCATCCTTCCACCCCCACCTTCAAAGCATAATCAGAGACAACAGTTTTTTGAGCAACAAGGTGGTGCATCTCATTCAAGTAATGGATCCAGTTCCTCTTATGACAGTTTGTTGGGACAAACTCAAAATCTCTCTCTGAATTCATCCACCCCCACCAAACAACAGAAGCCAGAAGATGCCCTTTTCAAAGATCTAGTTGATTTTGCAAAATCCAAAACTTCCTCATCTTCAAAACCCAATAGGTCATATTGA 1542 0.4345 MANNAAACAERATSDMLIGPDWAINIELCDIINMDPRQAKDALKILKKRLGSKNPKTQLLALFVLETLSKNCGESVFQQIIERDVLHEMVKIVKKKPDLNVREKILILIDTWQEAFGGPNGVYPQYYAAYNELKSAGVEFPPRNESSVPFFTPPQTQPIHHSAAEFDDAAIQASLQSDESGLSLPEIKNAQGIADVLMEMLNALNPKDPEGVKEEVIVDLVDQCRSYQKRVMLLVNNTSDEELLSQGLALNDSLQRVLCQHDDIVKGTADSGARKAETSVLPLVNVNHEDDDSEDDFAQLAHRSSRDTHAQNRKPAYDKAEPGMMNSLIPPPPASRKPVYSGAGMVDYLSGDAYNTEGSPENPEPTPFAAPLHSSPNPTPSTIPTQSSPGPHAMSTSSPIFSRQPVYDEPSPVNISSEHLPPAPWDTQSPGILPPPPSKHNQRQQFFEQQGGASHSSNGSSSSYDSLLGQTQNLSLNSSTPTKQQKPEDALFKDLVDFAKSKTSSSSKPNRSY. 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02421 513 MobiDBLite consensus disorder prediction 301 491 - -
Seca4g02421 513 Pfam VHS domain 9 135 IPR002014 GO:0035091|GO:0043130
Seca4g02421 513 ProSiteProfiles VHS domain profile. 12 141 IPR002014 GO:0035091|GO:0043130
Seca4g02421 513 MobiDBLite consensus disorder prediction 301 316 - -
Seca4g02421 513 Gene3D - 175 273 IPR038425 -
Seca4g02421 513 MobiDBLite consensus disorder prediction 386 404 - -
Seca4g02421 513 SUPERFAMILY GAT-like domain 144 267 - -
Seca4g02421 513 PANTHER TOM1-LIKE PROTEIN 1 509 IPR044836 GO:0035091|GO:0043130|GO:0043328
Seca4g02421 513 SUPERFAMILY ENTH/VHS domain 4 142 IPR008942 -
Seca4g02421 513 MobiDBLite consensus disorder prediction 364 385 - -
Seca4g02421 513 FunFam TOM1-like protein 2 4 151 - -
Seca4g02421 513 ProSiteProfiles GAT domain profile. 178 266 IPR004152 GO:0035091|GO:0043130
Seca4g02421 513 CDD VHS 10 135 - -
Seca4g02421 513 CDD GAT_GGA-like_plant 186 264 - -
Seca4g02421 513 PIRSF TOM1 1 512 IPR014645 -
Seca4g02421 513 Pfam GAT domain 192 267 IPR004152 GO:0035091|GO:0043130
Seca4g02421 513 Gene3D - 2 158 IPR008942 -
Seca4g02421 513 SMART VHS_2 5 137 IPR002014 GO:0035091|GO:0043130
Seca4g02421 513 MobiDBLite consensus disorder prediction 438 486 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02421 Seca-Chr4 41383558 41389162 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02421 - - gmx:100792343 845.114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00742 4 12515886 12524500 Seca4g02421 4 41383558 41389162 PCT