Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01958 ATGTCGAATCTCGAGTCTGCACCGCAGACGCTAACTCGGCGGCCGTCGAGAAGCGCCGCCATGACAACTTTCTCGACGGAGGTTTTCGACAATGACGTCGTCGTTCCTTCCTCACTCGCCTCCATCTCGCCCATTCTTCGAGTGGCCAACGAGATCGAAAGCGAGCGCCCTAGGGTTGCCTATCTATGTCGATTCTATGCATTCGAGAAGGCGCACCGATTAGACCAGAGCTCCAGCGGTCGTGGTGTTAGGCAGTTTAAGACGCTGTTGCTGCAGCGACTGGAGAGGGACAATGCGACCAGTCTTGCCGCTCGGGTTAAGAAAACAGATGCAAGGGAAATCCAGGCATATTATCAGCAATACTATGAGCATTATGTCAGAGCTCTTGATCAAGGAGAGCAGGCTGACAGAGCACAGCTTGGTAAAGCTTACCAGACCGCTGGGGTGCTTTTTGAAGTGCTTTGTGCTGTTAACAAGACTGAGAAAGTCGAAGAAGTTGCTCCTGAGATTATTGCAGCTGCTAGAGATGTCCAGGAAAAGACGGAAATATATGCGCCTTTTAACATTCTTCCATTGGATTCTGCCGGGGCTTCTCAGCCTATCATGCAGCTTGAAGAGATTAAGGCAGCTGTTTCTGCGCTCTGGAATACTCGTGGCTTGAACTGGCCTAGTTCCTTCGAGCAACATCGACAGAGAACTGGAGATTTGGATGTGCTTGATTGGCTTAGAGCCATGTTTGGGTTCCAGAAAGACAACGTAAGGAATCAGAGAGAGCATTTGATTCTGCTTCTTGCTAACTCTCACATAAGGCTAAACCCCAAACCTGAGCCTCTCAACAAGCTTGATGATCGTGCGGTTGATGCAGTGATGAGTGATCTCTTTAGTAATTACAAAAAGTGGTGCAAATTTTTGGGGAGAAAACATAGTTTACGACTCCCTCAAGGTCAGCAAGAGATACAACAGAGGAAATTACTTTATATGGGCTTATATCTTCTCATATGGGGTGAAGCATCCAATGTTCGCTTCATGCCGGAGTGTCTCTGCTACATATTTCACAATATGGCATATGAACTTCATGGTTTATTGGCTGGAAATGTCAGTATTGTTACTGGTGAAAACATCAAACCTTCTTATGGTGGTGATGATGAGGCATTCTTGCGCAAGGTCATAACTCCCATATACAAAGTAATTGAAAAGGAAGCTGAGAAGAGTAAAAATGGAACAGCTCCTCACTCAGCCTGGTGCAACTATGATGATCTAAATGAGTATTTCTGGTCACCTGATTGCTTTTCTCTTGGATGGCCCATGCGTGATGATGGTGAATTTTTTAAATCAACATATAATTTGACCCAGGGAAGAAAAGGTGCTCCGAAAAAACCTGGAAGAGCTGGCAAAACAAATTTTGCTGAAACCCGATCCTATTGGCACATCTTTCGTAGTTTCGATCGTCTTTGGACCTTCTATTTACTGGGTTTGCAGGTGATGTTCATTATAGCATGGGAAGGGATTTCAATAATGGAAATCTTTCAGAAAGATGTCTTGTATAATCTCTCTAGCATATTCATCACAGCAGCTATTCTACGCTTACTTCAAAGTATCTTGGACCTGGTTCTGAACTTTCCAGGCTATCATCGTTGGAGATTCACTGATGTGCTACGAAACATTCTCAAAGTCATTGTTAGTCTTTTTTGGGTTATTGTTCTTCCACTCTTCTATGTGCATTCCTTCGGAGGCGCCCCTGAGATTATCAAGACGTTGCTTTCCTTTCTTCATCAAATAAAGGGGATTCCACCATTGTATATGTTGGCAGTTGCAGTGTATCTGCTTCCAAATTTACTCGCAGCTGTTCTCTTCCTTTTCCCAATGCTCAGACGTTGGATTGAAAACTCGGACTGGCACATATTTAGACTCCTCTTATGGTGGTCACAGCCAAGGATCTATGTTGGAAGAGGAATGCATGAGAGTCAATTTTCTCTCTTAAAGTACACTCTTTTCTGGGTGATTCTCTTGGCTGCCAAATTTTCATTCAGCTTTTTTTTCCAGATCAAACCTCTAGTTAAGCCAACTAAGGACATAATGAGCATTCGACATGTTGATTTTGCTTGGCATGAGTTTTTCCCCAATGCTCAAAATCACTATGGTGCAGTTTTTGCACTCTGGGCTCCTGTACTTATGGTTTATTTCATGGACACTCAAATCTGGTATTCTGTCTTCTCAACTCTGTGTGGTGGTGTTATTGGAGCCTTTGATCGTCTAGGAGAGATACGCACTCTGAGCATGCTAAGATCACGATTTCAATCGTTGCCTGGTGCATTCAACACATACTTGGTTCCTACTGACAAGAAACGGAAAAAGAGATTTTCTCTCTCAAAGCGATTTGCTGAGATTTCTGCAGGCAAAAGGAGTGAAGCTGCTAAATTTGCCCAATTATGGAATGAAGTTATTTGCAGTTTCCGTGAGGAAGATATTATAAGTGATAGGGAGATGGATCTTTTGTTGGTTCCTTACTCATCAGATCCTAGCCTGAAAATAATTCAATGGCCACCATTTCTGCTTGCAAGCAAGATTCCTATTGCACTGGATATGGCAGCTCAATTTCGAGGAAGGGACTCTGATCTTTGGAAGCGCATATGTGCAGATGAATATATGAAATGCGCTGTGATTGAATGTTATGAATCTTTTAAAAATGTCCTGAATGCTTTGGTGGTTGGAGAAGCTGAACAAAGGACAATCTCTGTCATCATAAAGGAAGTTGAAAACAGCATTTCTAAGAATACACTTCTTACCAATTTCCGAATGGGATTTTTGCCTTCCCTTTGTAAGAAGTTTGTAGAGCTTGTGGAAATTTTGAAAGATGCAAATGCATCCAAGCGAGATACGGTAGTGGTCTTGTTGCAAGACATGTTAGAAGTGTTTACTCGTGACATGATGGTGAATGAAATCAGTGAGTTAGCAGAACTTAATCATAGTAGCAAGGATACTGGAAGGCAACTTTTTGCTGGTACTGATGCAAAGCCGGCTGTACTCTTCCCTCCAGTGGTTACAGCACAATGGGAGGAACAGATAAGACGTCTTTATTTACTCTTGACGGTGAGGGAATCTGCCATTGAGGTTCCAACAAACCTTGAAGCACGCAGAAGGATTGCATTCTTTACCAATTCATTGTTCATGGATATGCCACGTGCTCCACGAGTTCGTAAAATGCTCTCATTCAGTGTCCTAACTCCATACTATAGTGAAGAGACTGTCTATTCGAAGAATGACCTTGAGGTTGAAAACGAAGATGGTGTGTCAATTATATATTACCTGCAGAAGATCTTCCCTGATGAGTGGAATAACTTCATGGAGCGACTTGATTGTAAGAAAGATAGTGAGATATGGGAGAAAGAAGAGAATATATTGCAGCTACGTCACTGGGCCTCATTACGAGGACAAACGCTTAGCAGGACAGTGAGGGGAATGATGTACTACCGGCGGGCTCTTAAGCTCCAGGCTTTTCTTGATATGGCTAATGAAAAAGAGATACTTGATGGCTATAAAGTTGTTACCCTTCCATCTGAAGAAGATAAAAAGAGTCATAGATCACTATATGCCAGTTTAGAGGCTGTTGCTGACATGAAATTCACATACATCGCTACCTGTCAGATCTATGGGAATCAGAAGCGCAGTGGAGACCGCCGTGCAACAGACATCCTGAATTTGATGGTTAACAATCCCTCGCTTCGTGTGGCATATATTGATGAAGTTGAAGAAAGAGAAGGAGGAAAAGTACAGAAAGTTTATTACTCTGTATTGGTCAAAGCTGTAGACAACCATGACCAAGAAATATATCGAATAAAACTTCCGGGTCCAGCAAAGTTAGGAGAAGGGAAGCCTGAAAATCAAAATCATGCAATCATTTTTACTAGAGGGGAAGCTCTTCAGACTATAGACATGAACCAGGATAACTATTTGGAAGAAGCTTTGAAAATGCGTAACCTTCTGGAAGAATTTAATGAGGATCACGGGGTGCGTCGACCTACTATATTAGGTGTTCGAGAGCATATCTTCACTGGCAGTGTTTCGTCCTTGGCTTGGTTTATGTCAAATCAAGAAACAAGCTTTGTCACAATTGGTCAAAGAGTTCTTGCAAGACCCCTGAAGGTACGATTCCACTATGGTCATCCAGATGTTTTTGATAGAATTTTCCACATTACCCGTGGAGGAATGAGCAAGGCTTCTCGTGGCATCAATCTAAGCGAGGATATTTTTGCCGGTAATATTCTTGAAACACCTTTCTTAGCATTGATATTTGATATATCTTCCTCTGCATCACATTCCTTTGCCTATACAGGATTCAACTCAACACTACGGCGCGGAAATGTTACTCATCATGAATACATCCAAGTTGGAAAGGGTAGAGATGTTGGGCTCAATCAAATCTCACTTTTTGAAGCAAAAGTTGCTTGTGGTAATGGAGAGCAGACACTAAGCAGAGATATCTACCGGCTGGGGCATCGTTTTGACTTTTTCCGCATGCTATCATTTTATTTTACAACCGTTGGATTTTATATCAGCTCAATGATTGTCGTCCTTACGACTTATGCGTTCCTATATGGCAAACTATACCTGTCATTGAGTGGATTTGAGGCTGCAATAGTAAAGTTAGCAAGGAGAAGGGGAGATGATGCACTAAAAGCAGCAATAGCTTCGCAATCCGTTGTTCAAATAGGACTTCTGATGACTCTGCCCATGGTCATGGAAATTGGACTAGAGAGAGGGTTCAGAACTGCTCTGGGTGATTTCATAATAATGCAGTTGCAGCTAGCACCTGTTTTCTTCACTTTCTCGCTAGGGACGAAAATGCACTATTATGGGCGCACACTCCTGCACGGAGGGGCAAAGTACAGAGCAACTGGGCGTGGTTTTGTAGTTCGCCATGAGAAGTTTGCAGAAAATTACAGGCTGTACTCTAGAAGTCACTTCGTAAAAGGGATTGAGCTCACAATGTTGCTCATATGTTATAAGATTTATGGATCTGCGACGCCTGATTCAACAACATATGGTCTTCTCTCATGGTCAATGTGGTTTTTAGTTTGTTCTTGGCTGTTTGCTCCTTTCCTTTTTAATCCATCGGGATTTGAGTGGCAGAAGATAGTTGAGGACTGGGATGATTGGAATAAATGGATAAGTAATCGAGGTGGTATTGGTGTTCCTTCAAACAAGAGCTGGGAGTCGTGGTGGGATGAGGAGCAGGATCATCTGCAGCACACTGGGTTGTTAGGGCGGATTTGTGAGATTATTCTTTCCTTGCGTTTCTTTATCTATCAGTATGGGATTGTGTATCATCTCAGTGTAGCAAGAGGTGACAAGAGCATCATGGTTTATGCTCTGTCCTGGCTAGTGATAGTAGCTGTCATGGTTATATTGAAGATTGTGTCCATGGGTAGAAAGAGGTTCAGTGCAGATTTCCAGTTGATGTTTCGTCTTCTCAAATTGTTTCTGTTTATTGGAGCCATTGTTACCCTGGGCTTAATGTTTACTCTTCTTAGTCTCACAGTTGGAGACATCTTTGTGAGCCTCCTAGCCTTTTTGCCAACAGCATGGGCACTTATACAGATAGCACAAGCGTGCAGGCCATTTGTGAAGGGCATTGGAATGTGGGGGTCAGTCAAAGCTTTAGCGAGGGGCTACGAATACCTGATGGGAGTGATTATTTTTGCACCAGTGGCCGTATTGGCATGGTTCCCATTTGTTTCAGAATTCCAAACTAGGCTGCTATTCAACCAAGCATTCAGCCGAGGACTTCAAATCCAACGCATTCTGTCTGGTGGCAAGAAGAATAAGTAA 5829 0.4282 MSNLESAPQTLTRRPSRSAAMTTFSTEVFDNDVVVPSSLASISPILRVANEIESERPRVAYLCRFYAFEKAHRLDQSSSGRGVRQFKTLLLQRLERDNATSLAARVKKTDAREIQAYYQQYYEHYVRALDQGEQADRAQLGKAYQTAGVLFEVLCAVNKTEKVEEVAPEIIAAARDVQEKTEIYAPFNILPLDSAGASQPIMQLEEIKAAVSALWNTRGLNWPSSFEQHRQRTGDLDVLDWLRAMFGFQKDNVRNQREHLILLLANSHIRLNPKPEPLNKLDDRAVDAVMSDLFSNYKKWCKFLGRKHSLRLPQGQQEIQQRKLLYMGLYLLIWGEASNVRFMPECLCYIFHNMAYELHGLLAGNVSIVTGENIKPSYGGDDEAFLRKVITPIYKVIEKEAEKSKNGTAPHSAWCNYDDLNEYFWSPDCFSLGWPMRDDGEFFKSTYNLTQGRKGAPKKPGRAGKTNFAETRSYWHIFRSFDRLWTFYLLGLQVMFIIAWEGISIMEIFQKDVLYNLSSIFITAAILRLLQSILDLVLNFPGYHRWRFTDVLRNILKVIVSLFWVIVLPLFYVHSFGGAPEIIKTLLSFLHQIKGIPPLYMLAVAVYLLPNLLAAVLFLFPMLRRWIENSDWHIFRLLLWWSQPRIYVGRGMHESQFSLLKYTLFWVILLAAKFSFSFFFQIKPLVKPTKDIMSIRHVDFAWHEFFPNAQNHYGAVFALWAPVLMVYFMDTQIWYSVFSTLCGGVIGAFDRLGEIRTLSMLRSRFQSLPGAFNTYLVPTDKKRKKRFSLSKRFAEISAGKRSEAAKFAQLWNEVICSFREEDIISDREMDLLLVPYSSDPSLKIIQWPPFLLASKIPIALDMAAQFRGRDSDLWKRICADEYMKCAVIECYESFKNVLNALVVGEAEQRTISVIIKEVENSISKNTLLTNFRMGFLPSLCKKFVELVEILKDANASKRDTVVVLLQDMLEVFTRDMMVNEISELAELNHSSKDTGRQLFAGTDAKPAVLFPPVVTAQWEEQIRRLYLLLTVRESAIEVPTNLEARRRIAFFTNSLFMDMPRAPRVRKMLSFSVLTPYYSEETVYSKNDLEVENEDGVSIIYYLQKIFPDEWNNFMERLDCKKDSEIWEKEENILQLRHWASLRGQTLSRTVRGMMYYRRALKLQAFLDMANEKEILDGYKVVTLPSEEDKKSHRSLYASLEAVADMKFTYIATCQIYGNQKRSGDRRATDILNLMVNNPSLRVAYIDEVEEREGGKVQKVYYSVLVKAVDNHDQEIYRIKLPGPAKLGEGKPENQNHAIIFTRGEALQTIDMNQDNYLEEALKMRNLLEEFNEDHGVRRPTILGVREHIFTGSVSSLAWFMSNQETSFVTIGQRVLARPLKVRFHYGHPDVFDRIFHITRGGMSKASRGINLSEDIFAGNILETPFLALIFDISSSASHSFAYTGFNSTLRRGNVTHHEYIQVGKGRDVGLNQISLFEAKVACGNGEQTLSRDIYRLGHRFDFFRMLSFYFTTVGFYISSMIVVLTTYAFLYGKLYLSLSGFEAAIVKLARRRGDDALKAAIASQSVVQIGLLMTLPMVMEIGLERGFRTALGDFIIMQLQLAPVFFTFSLGTKMHYYGRTLLHGGAKYRATGRGFVVRHEKFAENYRLYSRSHFVKGIELTMLLICYKIYGSATPDSTTYGLLSWSMWFLVCSWLFAPFLFNPSGFEWQKIVEDWDDWNKWISNRGGIGVPSNKSWESWWDEEQDHLQHTGLLGRICEIILSLRFFIYQYGIVYHLSVARGDKSIMVYALSWLVIVAVMVILKIVSMGRKRFSADFQLMFRLLKLFLFIGAIVTLGLMFTLLSLTVGDIFVSLLAFLPTAWALIQIAQACRPFVKGIGMWGSVKALARGYEYLMGVIIFAPVAVLAWFPFVSEFQTRLLFNQAFSRGLQIQRILSGGKKNK. 1943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01958 1942 Pfam Vta1 like 41 169 IPR039431 -
Seca4g01958 1942 SMART FKS1_dom1_2 321 437 IPR026899 -
Seca4g01958 1942 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 921 934 IPR004838 GO:0003824|GO:0009058|GO:0030170
Seca4g01958 1942 Coils Coil 1940 1942 - -
Seca4g01958 1942 Pfam 1,3-beta-glucan synthase subunit FKS1, domain-1 323 434 IPR026899 -
Seca4g01958 1942 PANTHER LYST-INTERACTING PROTEIN LIP5 DOPAMINE RESPONSIVE PROTEIN DRG-1 103 1937 - -
Seca4g01958 1942 Coils Coil 1314 1334 - -
Seca4g01958 1942 Gene3D - 29 189 IPR023175 -
Seca4g01958 1942 FunFam callose synthase 3 26 184 - -
Seca4g01958 1942 Pfam 1,3-beta-glucan synthase component 1038 1125 IPR003440 GO:0000148|GO:0003843|GO:0006075|GO:0016020
Seca4g01958 1942 Pfam 1,3-beta-glucan synthase component 1129 1419 IPR003440 GO:0000148|GO:0003843|GO:0006075|GO:0016020
Seca4g01958 1942 Pfam 1,3-beta-glucan synthase component 1443 1757 IPR003440 GO:0000148|GO:0003843|GO:0006075|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01958 Seca-Chr4 32898398 32913014 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01958 5 1942 Glycosyltransferase AT1G05570 60.700 0.0 2431
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01958 K11000 - gmx:100777245 3504.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01958 4 32898398 32913014 Seca12g06286 12 154749501 154757419 PCT