Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01851 ATGGCAACTGAGCTAGTCAATGCTGCAACGAGCGAGAAGCTGGCTGAAACTGATTGGGCAAAAAATATTGAAATCTGTGAGTTAGTTGCACATGATAAAAGGCAAGCTAGAGATGTTGTTAAAGCTATAAAAAAAAGACTGGGTAGCAAACACCCTGATACTCAACTTTACGCTGTCATGTTGCTGGAAATGTTGATGAACAATATTGGAGAGCATATTCATGAGCAGGTGGTTGATACTGGAATTATTCCTATTCTTGTGAAAATTGTGAAGAAAAAGTCTGATTTGCCTGTGAGGGAGAGGATATTTCTTCTACTAGATGCTACACAAACATCCCTTGGTGGTGCTTCTGGAAAGTTTCCGCAGTACTATAATGCATATTATGATTTGGTGAGTGCTGGAGTGCAGTTTCCTCAAAGGTCTCAAGTGGTCCAATCAAATCATGCTAGTTCACAACCTAGTAGGACTGGTAATGAACCAAACAGGGAGCAGGCCTTACCTAGACATGAAGTGGCAGCTAAGCAAGCAGAGTCACACGCTGTCCCTGAATCTAGCATTATTCAAAAGGCTAGTAATGCATTAGAAGTTCTAAAAGATGTGCTTGATGCTGTTGATCCTCAACATCCTCAGGGTGCAAGGGATGAATTCACCCTTGACCTGGTAGAACAATGTTCATTTCAGAAGCAACGGGTAATGCATCTTGTGATGGCTTCTCGGGATGAGAGGATAGTTTCTCGAGCAATTGAACTAAATGAGCAGCTTCAGAAAGTTCTTGCAAGACATGATGACCTTCTTTCTGGCAGAGCTACAACAACTGCTACTAGTTTTGATCATGCAGAAGCAGAGGAGGAAGAGGAGCCTGAACAGTTAGTCCGAAGATTACGCAAAGGAAAGGCTTGTGCAAGGCCTGAAGATGATGAAGAGACTGAAACCAACATGTCGCGCTTGGGTTTGCTTGGAGAGAGACTCAATCGTCCTCTAATTCGACCACTCTCCTTAGAGCCATCTCGCGAAGCTGATACGCGTTCTCCACCTGCTGTAAAGCCACCGCGAGAAGCTGATACGCGTTCTCCACCTGCTGTAATCCCACCACCTCCTCCTCCAAAACAGAATGGAGAGCTTCCTCATGTGGGAATTCCACCACCACCTTCAAAGCACATTGAGAGGGAGAGGTTTTTTAAGGAAAACAAGGATGGTTCTAATTTGTCTGGCCACATGAGAGGCCTCTCCTTACATAGTCGTAATGGCAGCAGCTCTCGCAGTGGAAGCTATGATTTTAGTGACTGA 1287 0.4452 MATELVNAATSEKLAETDWAKNIEICELVAHDKRQARDVVKAIKKRLGSKHPDTQLYAVMLLEMLMNNIGEHIHEQVVDTGIIPILVKIVKKKSDLPVRERIFLLLDATQTSLGGASGKFPQYYNAYYDLVSAGVQFPQRSQVVQSNHASSQPSRTGNEPNREQALPRHEVAAKQAESHAVPESSIIQKASNALEVLKDVLDAVDPQHPQGARDEFTLDLVEQCSFQKQRVMHLVMASRDERIVSRAIELNEQLQKVLARHDDLLSGRATTTATSFDHAEAEEEEEPEQLVRRLRKGKACARPEDDEETETNMSRLGLLGERLNRPLIRPLSLEPSREADTRSPPAVKPPREADTRSPPAVIPPPPPPKQNGELPHVGIPPPPSKHIERERFFKENKDGSNLSGHMRGLSLHSRNGSSSRSGSYDFSD. 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01851 428 MobiDBLite consensus disorder prediction 142 161 - -
Seca4g01851 428 ProSiteProfiles GAT domain profile. 178 266 IPR004152 GO:0035091|GO:0043130
Seca4g01851 428 SMART VHS_2 2 134 IPR002014 GO:0035091|GO:0043130
Seca4g01851 428 MobiDBLite consensus disorder prediction 162 176 - -
Seca4g01851 428 FunFam TOM1-like protein 2 1 147 - -
Seca4g01851 428 Pfam VHS domain 4 111 IPR002014 GO:0035091|GO:0043130
Seca4g01851 428 MobiDBLite consensus disorder prediction 383 401 - -
Seca4g01851 428 MobiDBLite consensus disorder prediction 356 382 - -
Seca4g01851 428 Gene3D - 1 136 IPR008942 -
Seca4g01851 428 Pfam GAT domain 192 267 IPR004152 GO:0035091|GO:0043130
Seca4g01851 428 MobiDBLite consensus disorder prediction 142 184 - -
Seca4g01851 428 CDD VHS 2 130 - -
Seca4g01851 428 CDD GAT_GGA-like_plant 186 264 - -
Seca4g01851 428 MobiDBLite consensus disorder prediction 406 428 - -
Seca4g01851 428 MobiDBLite consensus disorder prediction 273 428 - -
Seca4g01851 428 MobiDBLite consensus disorder prediction 285 312 - -
Seca4g01851 428 SUPERFAMILY ENTH/VHS domain 3 140 IPR008942 -
Seca4g01851 428 SUPERFAMILY GAT-like domain 184 268 - -
Seca4g01851 428 PANTHER TOM1-LIKE PROTEIN 1 414 IPR044836 GO:0035091|GO:0043130|GO:0043328
Seca4g01851 428 Gene3D - 181 275 IPR038425 -
Seca4g01851 428 ProSiteProfiles VHS domain profile. 9 138 IPR002014 GO:0035091|GO:0043130
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01851 Seca-Chr4 30922114 30927868 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01851 - - gmx:100785131 658.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01851 4 30922114 30927868 Seca4g01851 4 30922114 30927868 ECH
Seca12g06353 12 155508736 155514392 Seca4g01851 4 30922114 30927868 PCT