Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06353 ATGTTCAGGCAAGCTAGAGATGTTGTTAAAGCTATAAAAAAGAGACTGGGTAACAAGAACCCCAATGTTCAACTTCATGCTGTCATGTTGCTAGAAATGTTGATGAACAATATTGGAGATCATATTCATGAGCAGGTGGTTGATACAGGAATTATTCCTATTCTTGTGAAAATTGTGAAGAAAAAGTCAGATTTTCCTGTGAGGGAGCGGATATTTCTCCTACTAGATGCCACACAAACATCCCTTGGTGGTGCTTCTGGAAAGTTTCCTCAGTATTATAATGCATATTATGATTTGGTGAGTGCTGGGGTGCAGTTTCCTCAAAGAACTCAAGTTGTCGGAACAAATCGTCCAAATCCACAACCCAATAGGACCAATAATGTACCAAACAGGGAGCAGGCCCCACCTAGACATGGAGGGGTTGCTCAGCAAGCAGAGTCCCACACTGTTCCTGAATCTAGCATCATTCAAAAGGCTAGTAATGCATTAGAAGTTCTAAAAGAAGTCCTTGATGCTGTTGATGCCCAACATCCTCAGGGAGCAAGAGATGAATTCACTCTTGACCTTGTTGAACAATGTTCATTTCAGAAGCAGAGGGTAATGCATCTTGCAATGGCTTCTAGAGATGAGAGGATAGTTTCCCGAGCAATTGAATTAAATGAGCAGCTTCAGAAAGTTCTAGCAAGACATGATGACCTCTCTGGAAGAGCTACAATAACTGCTAATCACTTTGACCGTGAAGAAGCAGAGGAGGAAGAAGAACCTGAACAGTTATTCCGAAGATTACGCAAAGGAAAGGCTTGTGTAAGGCCTGAAGATGAAGAGAATAAACCTGAGTTCCCTCACTTGGGTTTACTTGAAGAGAGATTCAACCGTCCGCTAATAAGACCGCTCTCTTTGGAGCCATCTCGAGAAGCTAATACTCGTCCTGCACCTGCTGTAGTTCCTCCTCCAATTGCAAAACACAATGGGGAGCTTCCTCATGTAGGTGCAATTCCACCACCACCTGCAAAGCACATTGAGAGGGAGAGATATTTTCAGGAAAATAAGGATGGTGCCACTTTGGCTAGCCACATGAGAGGCCTCTCCTTACATAGTCACAATGGCAGCAGCTCTCACAGTGGAAGCTTTGATTTTAGTGATTGA 1146 0.4328 MFRQARDVVKAIKKRLGNKNPNVQLHAVMLLEMLMNNIGDHIHEQVVDTGIIPILVKIVKKKSDFPVRERIFLLLDATQTSLGGASGKFPQYYNAYYDLVSAGVQFPQRTQVVGTNRPNPQPNRTNNVPNREQAPPRHGGVAQQAESHTVPESSIIQKASNALEVLKEVLDAVDAQHPQGARDEFTLDLVEQCSFQKQRVMHLAMASRDERIVSRAIELNEQLQKVLARHDDLSGRATITANHFDREEAEEEEEPEQLFRRLRKGKACVRPEDEENKPEFPHLGLLEERFNRPLIRPLSLEPSREANTRPAPAVVPPPIAKHNGELPHVGAIPPPPAKHIERERYFQENKDGATLASHMRGLSLHSHNGSSSHSGSFDFSD. 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06353 381 MobiDBLite consensus disorder prediction 361 381 - -
Seca12g06353 381 CDD GAT_GGA-like_plant 155 233 - -
Seca12g06353 381 ProSiteProfiles GAT domain profile. 147 235 IPR004152 GO:0035091|GO:0043130
Seca12g06353 381 MobiDBLite consensus disorder prediction 349 381 - -
Seca12g06353 381 Pfam GAT domain 161 233 IPR004152 GO:0035091|GO:0043130
Seca12g06353 381 Coils Coil 156 176 - -
Seca12g06353 381 MobiDBLite consensus disorder prediction 112 132 - -
Seca12g06353 381 PANTHER TOM1-LIKE PROTEIN 3 304 IPR044836 GO:0035091|GO:0043130|GO:0043328
Seca12g06353 381 Pfam VHS domain 4 80 IPR002014 GO:0035091|GO:0043130
Seca12g06353 381 SUPERFAMILY GAT-like domain 152 234 - -
Seca12g06353 381 SUPERFAMILY ENTH/VHS domain 4 109 IPR008942 -
Seca12g06353 381 Gene3D - 148 243 IPR038425 -
Seca12g06353 381 Gene3D - 2 105 IPR008942 -
Seca12g06353 381 CDD VHS 4 99 - -
Seca12g06353 381 ProSiteProfiles VHS domain profile. 1 107 IPR002014 GO:0035091|GO:0043130
Seca12g06353 381 SMART VHS_2 1 103 IPR002014 GO:0035091|GO:0043130
Seca12g06353 381 MobiDBLite consensus disorder prediction 112 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06353 Seca-Chr12 155508736 155514392 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06353 - - gmx:100785131 542.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06353 12 155508736 155514392 Seca12g06353 12 155508736 155514392 ECH
Seca12g06353 12 155508736 155514392 Seca4g01851 4 30922114 30927868 PCT