Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01846 ATGGCTGAGGAAGCTCCAAAGACAACCACAACAGCAACAACTCAAGAGGTAGAGGCGAAGGAGGAAGTGGTGGTCACTGATGTTTCACCTGCTGACAAATCAGACACCAGTGTTCCTGTAGAGCAAGACACAGAAGAGCCCGAGACCGAGCCCGAGAAGAAGCCCGTTGAGGAGACTCCTGAGGCTGAGACTGAGGTATCGAAACCCAGTGGCGATGAGAAAATTCCAGAGTCTGGTTCGTTCAAGGAAGAGAGCACCATTGTTGCTGAGCTACCTGAAGCTGAGAAGAAAGCACTTCAAGAGCTCAAGGTCCTTATTCAAGATGCACTCAACAAACATGAATTCTCTGCACCTCTCAACCCACCCAAAGAAGAAAAGCCCGAGCCCGTAGCTGATGACAAAGAAAAAGAAAAGCCCGTTGAGGAGGAGAAGAAAGAACAAGTTCCAGAGCCAGCTGCTGCTGACGTGTCACCAACACCACCCGCAGAACCTGACCAACCCACAAAAAAAGAGGAAGAAGAAGTAGCAGAGAAGAAAGAAAAAGAAGAAGAAGAAGCTGTAGCTGTAGCTGAAGCTGAAACTGCAGTACCAGAAGTGAAAGAAACCGATGTGGCTGCTCCTCCTTCTATAGATGAAGATGGAGCAAAAACCGTTGAGGCCATTGAAGAAACAGTTGTAGCTGTAGCTGCAACAGAGCAGAAAGCTTCAACTGAAGAGGAAGCCACCAAGGAGGAAGCTTCACCGCCATTGCAACCAGAAGAGGTATCCATTTGGGGGGTCCCACTCCTTGCTGATGAAAGGAGTGATGTGATTCTGTTGAAGTTTCTTCGTGCTAGAGACTTCAAGGTGAAAGATGCCTTCACCATGATCAAGAACACAATTAGGTGGAGGAAAGAGTTCAAAATTGATGAGTTATTGGAGGAAGACTTGGGTGATGATTTAGAGAAAGCTGTGTACATGCATGGCTTTGATAAGGAAGGTCACCCTGTTTGTTATAACATCTATGGAGAGTTCCAGAACAAGGAGCTTTACAAGAAAACATTTTCTGATGAGGAAAAGAGGCACAAGTTCTTGAGATGGAGAATTCAGTTTTTGGAGAAGAGTATCAGGAAGTTGGATTTCAACCCTGGTGGTATATGCACCATTGTTCAAGTCAATGACCTCAAGAATTCTCCTGGACCTGGTAAGTGGGAGCTTAGACAAGCAACCAAACAGGCCCTTGATTTGCTTCAGGATAACTATCCTGAATTTGTAGCCAAACAGGTCTTCATCAATGTGCCATGGTGGTACTTGGCAGTGAACAGGATGATAAGCCCTTTTCTTACACAGAGAACCAAAAGCAAATTTGTCTTTGCTGGACCATCCAAATCAGCTGAGACTCTTTTAAGGTACATAGCCCCAGAGCAACTTCCGGTCAAGTATGGTGGACTAAGCAAAGATGGGGAATTCGGAATTACTGATGCTGTTACAGAAATTACAGTGAAACCAGCAGCAAAACATACTGTGGAATTTCCGGTTACTGAGAACTGTCTACTCTCTTGGGAGCTAAGAGTAATAGGGTGGGATGTAAGCTATGGTGCAGAGTTTGTGCCAAGTTCAGAAGGAAGCTATACTGTGATCATTCAGAAGGCTAGAAAGGTTGCTTCATCAGAAGATCCAGTGCTTTGCAGCAATTACAAAATTGGTGAACCTGGGAAAGTGGTTCTCACTATTGACAATTCAAGCTCTAAGAAGAAGAAACTCTTGTACCGTTTGAAGACCAAGCCTACCTCTTCTGACTGA 1782 0.4512 MAEEAPKTTTTATTQEVEAKEEVVVTDVSPADKSDTSVPVEQDTEEPETEPEKKPVEETPEAETEVSKPSGDEKIPESGSFKEESTIVAELPEAEKKALQELKVLIQDALNKHEFSAPLNPPKEEKPEPVADDKEKEKPVEEEKKEQVPEPAAADVSPTPPAEPDQPTKKEEEEVAEKKEKEEEEAVAVAEAETAVPEVKETDVAAPPSIDEDGAKTVEAIEETVVAVAATEQKASTEEEATKEEASPPLQPEEVSIWGVPLLADERSDVILLKFLRARDFKVKDAFTMIKNTIRWRKEFKIDELLEEDLGDDLEKAVYMHGFDKEGHPVCYNIYGEFQNKELYKKTFSDEEKRHKFLRWRIQFLEKSIRKLDFNPGGICTIVQVNDLKNSPGPGKWELRQATKQALDLLQDNYPEFVAKQVFINVPWWYLAVNRMISPFLTQRTKSKFVFAGPSKSAETLLRYIAPEQLPVKYGGLSKDGEFGITDAVTEITVKPAAKHTVEFPVTENCLLSWELRVIGWDVSYGAEFVPSSEGSYTVIIQKARKVASSEDPVLCSNYKIGEPGKVVLTIDNSSSKKKKLLYRLKTKPTSSD. 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01846 593 SUPERFAMILY CRAL/TRIO domain 318 479 IPR036865 -
Seca4g01846 593 PRINTS Cellular retinaldehyde-binding protein signature 401 422 - -
Seca4g01846 593 PRINTS Cellular retinaldehyde-binding protein signature 271 293 - -
Seca4g01846 593 PRINTS Cellular retinaldehyde-binding protein signature 434 453 - -
Seca4g01846 593 SMART CRAL_TRIO_N_2 268 293 IPR011074 -
Seca4g01846 593 MobiDBLite consensus disorder prediction 1 17 - -
Seca4g01846 593 MobiDBLite consensus disorder prediction 113 195 - -
Seca4g01846 593 MobiDBLite consensus disorder prediction 165 188 - -
Seca4g01846 593 CDD SEC14 313 477 IPR001251 -
Seca4g01846 593 Coils Coil 169 193 - -
Seca4g01846 593 PANTHER PATELLIN-1 164 589 IPR044834 GO:0008289
Seca4g01846 593 Gene3D - 235 492 IPR036865 -
Seca4g01846 593 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 307 482 IPR001251 -
Seca4g01846 593 MobiDBLite consensus disorder prediction 1 88 - -
Seca4g01846 593 Pfam CRAL/TRIO domain 316 476 IPR001251 -
Seca4g01846 593 Pfam CRAL/TRIO, N-terminal domain 252 292 IPR011074 -
Seca4g01846 593 Gene3D GOLD domain 493 587 - -
Seca4g01846 593 MobiDBLite consensus disorder prediction 118 150 - -
Seca4g01846 593 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 488 586 IPR036598 -
Seca4g01846 593 SUPERFAMILY CRAL/TRIO N-terminal domain 87 309 IPR036273 -
Seca4g01846 593 ProSiteProfiles GOLD domain profile. 486 587 IPR009038 -
Seca4g01846 593 MobiDBLite consensus disorder prediction 231 252 - -
Seca4g01846 593 SMART sec14_4 312 479 IPR001251 -
Seca4g01846 593 MobiDBLite consensus disorder prediction 47 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01846 Seca-Chr4 30763988 30766821 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01846 272 471 Acyl Lipid Metabolism Gene Families AT1G55840 29.167 3.94e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01846 - - gmx:100805585 744.577
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01846 4 30763988 30766821 Seca4g01846 4 30763988 30766821 ECH
Seca12g06357 12 155545391 155548730 Seca4g01846 4 30763988 30766821 PCT