Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06357 ATGGCTGAAGAGGCTCCAAAGCAAGACTCAGTGGTGCAAGTGGAGGAAGTTGTGGTCACTGATGTTCTTCCACAGACTGAAAAAACACCTACTACTGTTCTTACAGAGAAAGATCCACTCCCTGAGCCTGAGAAAAAGAAGAACCCTGTTGAGGAGACTGTGACTTTGGAAACTCACCTCTCCAAACCCAACAGTGACACCACTGATGATAAAATCCCTGAATCAGGTGCCTTTAAGGAAGAAAGCACCAAACTTTCTGAACTTCCTGAGAATGAGAACAAGGCACTCCAAGAACTTAAGCACCTCATTCAGGATGCACTCAACAAGCATGAGTTCTCTGCACCCAAAGAAGAAAAGTTAGCAACAACCGTAGCTGCTGAAAAGGAACAGCCCCATGAGGAAGAAAAAGGTTCTCAACAGGTTGCTGATGCTGCTGCCACAGCAGAACCAGAACAAACCACAAAAACAGAGGAGGAGCAAGTTGCAATGAAGACAGAAGAAGGAGAGAAGAAGGAAGAAGTGAAAGAAACCGAGGTGGATTCTTCTTCTTCTGCTGCTGCTGCTGCTGCTGCTGATGTTGTTCCATCTGTAGATGATGATGGAGCAAAAACTGTGGAGGCCATTGAAGAGACTGTTGTTGCTGTCTCTTCCTCTGTTCCGGCAGATGAGCAACCTGCTACAGAGAAAGTGACTGAACCTGAAGCCAAGGAAGAAGCTTCATTGCCATTGCCACCTGAGGAAGTATCCATTTGGGGGATACCACTTCTTGCTGATGAAAGGAGTGATGTGATTCTGTTGAAGTTTCTGCGTGCCAGAGATTTTAAGGTGAAAGAGGCATTCACCATGATCAAGAACACAATCCGGTGGAGGAAAGAATTTAAAATGGATGAGTTGATGGAGGAGAAGTTTGGTGATGAGTTGGAGAAGGTGGTGTACATGCATGGATTTGATAAGGAAGGTCACCCTGTGTGTTATAACATTTATGGAGAATTCCAGAACAAGGAGTTGTATAAGAAGACTTTCTCTGATGAGGAGAAGAGGGAGAAGTTCCTTAGGTGGAGAATTCAGTTCCTGGAGAAGAGTATTAGGAAACTGGATTTCAACCCTGGTGGCATATGCACCATTGTTCAAGTCAATGATCTCAAGAATTCTCCTGGACCTGGCAAGTGGGAACTTAGACAAGCTACCAAACAAGCCCTGCAATTGCTTCAGGACAACTATCCTGAATTTGTAGCCAAACAGGTGTTCATCAATGTGCCATGGTGGTACCTGGCAGTGAATAGGATGATAAGCCCTTTTCTTACACAGAGAACCAAAAGCAAGTTTGTCTTTGCAGGGCCTTCCAAATCAACAGAGGCCCTTTTGAGATACATTGCTCCAGAGCAACTCCCGGTCAAGTATGGTGGACTAAGCAAAGATGGGGAATTCGAAATTTCCGATGCTGTTACAGAGATCACAGTAAAGCCAGCAACAAAACATACCGTGGAGTTTCCTGTTACTGAGAAATGCTTACTCTCGTGGGAGTTCAGAGTAATAGGGTGGGAAGTAAACTATGGAGCAGAATTTGTGCCAAGCTCAGAAGGAAGCTACACTGTAATTGTCCAAAAGGATAGAAAGATTGCTTCATCAGAAGAACCAGTGCTTTGCAACAGTTTTAATATTGGTGAAGCTGGGAAAGTTGTTCTCACTATTAACAACACAAGCTCTAAGAAAAAGAAACTCTTGTACCGCTTGAAGACTAAGCCATCCCCCTCTGTTTGA 1761 0.4435 MAEEAPKQDSVVQVEEVVVTDVLPQTEKTPTTVLTEKDPLPEPEKKKNPVEETVTLETHLSKPNSDTTDDKIPESGAFKEESTKLSELPENENKALQELKHLIQDALNKHEFSAPKEEKLATTVAAEKEQPHEEEKGSQQVADAAATAEPEQTTKTEEEQVAMKTEEGEKKEEVKETEVDSSSSAAAAAAADVVPSVDDDGAKTVEAIEETVVAVSSSVPADEQPATEKVTEPEAKEEASLPLPPEEVSIWGIPLLADERSDVILLKFLRARDFKVKEAFTMIKNTIRWRKEFKMDELMEEKFGDELEKVVYMHGFDKEGHPVCYNIYGEFQNKELYKKTFSDEEKREKFLRWRIQFLEKSIRKLDFNPGGICTIVQVNDLKNSPGPGKWELRQATKQALQLLQDNYPEFVAKQVFINVPWWYLAVNRMISPFLTQRTKSKFVFAGPSKSTEALLRYIAPEQLPVKYGGLSKDGEFEISDAVTEITVKPATKHTVEFPVTEKCLLSWEFRVIGWEVNYGAEFVPSSEGSYTVIVQKDRKIASSEEPVLCNSFNIGEAGKVVLTINNTSSKKKKLLYRLKTKPSPSV. 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06357 586 Gene3D GOLD domain 485 580 - -
Seca12g06357 586 PANTHER PATELLIN-1 44 583 IPR044834 GO:0008289
Seca12g06357 586 MobiDBLite consensus disorder prediction 22 93 - -
Seca12g06357 586 SUPERFAMILY CRAL/TRIO N-terminal domain 75 301 IPR036273 -
Seca12g06357 586 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 480 579 IPR036598 -
Seca12g06357 586 MobiDBLite consensus disorder prediction 63 93 - -
Seca12g06357 586 SUPERFAMILY CRAL/TRIO domain 310 472 IPR036865 -
Seca12g06357 586 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 300 475 IPR001251 -
Seca12g06357 586 ProSiteProfiles GOLD domain profile. 479 580 IPR009038 -
Seca12g06357 586 SMART CRAL_TRIO_N_2 261 286 IPR011074 -
Seca12g06357 586 CDD SEC14 306 470 IPR001251 -
Seca12g06357 586 MobiDBLite consensus disorder prediction 216 242 - -
Seca12g06357 586 Pfam CRAL/TRIO, N-terminal domain 246 285 IPR011074 -
Seca12g06357 586 SMART sec14_4 305 472 IPR001251 -
Seca12g06357 586 MobiDBLite consensus disorder prediction 109 139 - -
Seca12g06357 586 Gene3D - 296 484 IPR036865 -
Seca12g06357 586 MobiDBLite consensus disorder prediction 38 53 - -
Seca12g06357 586 MobiDBLite consensus disorder prediction 109 197 - -
Seca12g06357 586 Gene3D - 233 292 - -
Seca12g06357 586 MobiDBLite consensus disorder prediction 152 179 - -
Seca12g06357 586 PRINTS Cellular retinaldehyde-binding protein signature 264 286 - -
Seca12g06357 586 PRINTS Cellular retinaldehyde-binding protein signature 427 446 - -
Seca12g06357 586 Pfam CRAL/TRIO domain 309 469 IPR001251 -
Seca12g06357 586 MobiDBLite consensus disorder prediction 227 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06357 Seca-Chr12 155545391 155548730 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06357 265 464 Acyl Lipid Metabolism Gene Families AT1G55840 27.488 8.40e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06357 - - gmx:100788197 771.541
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06357 12 155545391 155548730 Seca12g06357 12 155545391 155548730 ECH
Seca12g06357 12 155545391 155548730 Seca4g01846 4 30763988 30766821 PCT