Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01807 ATGGAGGCAGTGAGCCCTGCGCCTGAACCTCAGAGATCACCATTGGCTACTAAAGAAGAAGCAGTAGCTCAAGTGCTAGATGATGACGCCGCGTTGAAAGACAGCACTGACGCAGAGATCACCAAAATTCGTCTCATGAGAGCTTTTGTTGAAACCCGGGATCCCTCTGCTAAGCTAGTAGTTGGAACTGAATTGAACTTTGGTGGGCAGGAAGTAGATGATTTGATGATTAGAAGATTCTTGCGAGCTCGTGATTTAGATGTTGAGAAGGCTTCAGCTATGTTCCTCAAGTACTTGAAATGGAAACGTTCATTTGTTCCAAATGGCTATATATCCCCATCAGAGATCCCTGGTGACATTGCACATGAAAAGATGTATGTGCAAGGAGTTGATAAGAAGGGTCGACCTATAACTGTTGCCTTTGCTGCTAAACATTATCAAAACAAAAATGGTGTAGATGTATTCAAACGGTATGTAGTTTTTGCTCTTGAAAAACTATGTTCTAGGATGCCACCAGGGCAGGAAAAGTTTTGTGCTATTGCAGATATTAAAGGATGGGGATATGCAAATAGTGACCTTCGTGGATACCTTGGTGCTCTATCCATTTTACAGGATTACTACCCAGAGAGATTGGGGAAGTTGTTAATTGTGCATGCACCTTACATGTTTATGAAAGTGTGGAAAATGATTTACCCTTTCATTGATGACAATACCAAGAAGAAGATAGTATTTGTGGACAACAAAAAGTTGAAATCAACACTGCTTGAAGACATAGATGAGAGTCAGCTCCCAGATATATATGGAGGTCAAATGCCATTAGTCCCTATCCAGGATTCCTGA 840 0.4143 MEAVSPAPEPQRSPLATKEEAVAQVLDDDAALKDSTDAEITKIRLMRAFVETRDPSAKLVVGTELNFGGQEVDDLMIRRFLRARDLDVEKASAMFLKYLKWKRSFVPNGYISPSEIPGDIAHEKMYVQGVDKKGRPITVAFAAKHYQNKNGVDVFKRYVVFALEKLCSRMPPGQEKFCAIADIKGWGYANSDLRGYLGALSILQDYYPERLGKLLIVHAPYMFMKVWKMIYPFIDDNTKKKIVFVDNKKLKSTLLEDIDESQLPDIYGGQMPLVPIQDS. 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01807 279 PANTHER OS03G0850700 PROTEIN 34 278 - -
Seca4g01807 279 CDD SEC14 126 270 IPR001251 -
Seca4g01807 279 Gene3D - 13 278 IPR036865 -
Seca4g01807 279 SUPERFAMILY CRAL/TRIO N-terminal domain 34 110 IPR036273 -
Seca4g01807 279 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 113 275 IPR001251 -
Seca4g01807 279 Pfam CRAL/TRIO domain 122 269 IPR001251 -
Seca4g01807 279 SMART CRAL_TRIO_N_2 73 98 IPR011074 -
Seca4g01807 279 SMART sec14_4 119 272 IPR001251 -
Seca4g01807 279 SUPERFAMILY CRAL/TRIO domain 121 272 IPR036865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01807 Seca-Chr4 29914961 29917574 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01807 79 264 Acyl Lipid Metabolism Gene Families AT1G55840 27.273 1.44e-11 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01807 - - gmx:100797666 429.869
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01807 4 29914961 29917574 Seca4g01807 4 29914961 29917574 ECH
Seca12g06380 12 155774002 155781830 Seca4g01807 4 29914961 29917574 PCT