Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06380 ATGGAGGCAAAAAACGAGATGAGTTACCCTGAGAGATCAACAACACTAGATTCCAACAAAAATTCAACTAGAGAAGGAGCAATAGCGCGAGATGATGATGTAGTGAAAGACATCACAGAGACTGAACTCACCAAAATCCGTCTTGTGAGAGCACTTGTTCAAACACGGGATCCCTCTTCTAAGATTCTTTGGTTGCAGGAAGAGGATGATTTAATGCTTAGAAGATTCCTGCGCGCTCGTGATTTAGATGTGGAGAAGGCTTCAGCAATGTTCCTCAAGTACTTGAAATGGAGACGTTCATTTGTTCCAAATGGTTCTATATCTCTGTCAGAGGTTCCTAATGAACTTACACAGGACAAGGTGTTCTCTCAAGGACGTGATAAGATAGGTCGACCTATAATTATTGTCTTCGGTAGAAAACATTTTCAAAACAGAGATGGTGTGGATGAATTCAAACGTGTTGTAGTCTATGTTCTTGATAAACTATGTGCAAGCATGCCACCTGGACAAGAAAAGTTTGTTGGTATAGCAGAACTCAAGGGATGGGGATACTCAAACAGTGACGTGCGTGGATACATCACTGCTCTGTCCATTTTGCAGGACTACTACCCTGAAAGATTGGGGAAGTTGTTTATTGTTCATGCACCTTACATTTTTTTGAAAGTGTGGAAAATTATTTACCCGTTCATTGACAACAAAACCAAGAAGAAGATAATATTTGTGGAGAACAATAAGCTGAAACCAACACTACTAGAAGACATTGAAGAAAGTCAGCTCCCAGAGATATATGGTGGCCAACTGCCATTAGTCTCGATCCAGAATAGCAACTAA 831 0.4043 MEAKNEMSYPERSTTLDSNKNSTREGAIARDDDVVKDITETELTKIRLVRALVQTRDPSSKILWLQEEDDLMLRRFLRARDLDVEKASAMFLKYLKWRRSFVPNGSISLSEVPNELTQDKVFSQGRDKIGRPIIIVFGRKHFQNRDGVDEFKRVVVYVLDKLCASMPPGQEKFVGIAELKGWGYSNSDVRGYITALSILQDYYPERLGKLFIVHAPYIFLKVWKIIYPFIDNKTKKKIIFVENNKLKPTLLEDIEESQLPEIYGGQLPLVSIQNSN. 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06380 276 Gene3D - 8 274 IPR036865 -
Seca12g06380 276 Pfam CRAL/TRIO, N-terminal domain 51 92 IPR011074 -
Seca12g06380 276 SUPERFAMILY CRAL/TRIO domain 111 268 IPR036865 -
Seca12g06380 276 Pfam CRAL/TRIO domain 119 265 IPR001251 -
Seca12g06380 276 PANTHER OS03G0850700 PROTEIN 36 274 - -
Seca12g06380 276 MobiDBLite consensus disorder prediction 1 27 - -
Seca12g06380 276 CDD SEC14 121 266 IPR001251 -
Seca12g06380 276 SMART sec14_4 114 268 IPR001251 -
Seca12g06380 276 SUPERFAMILY CRAL/TRIO N-terminal domain 36 104 IPR036273 -
Seca12g06380 276 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 109 271 IPR001251 -
Seca12g06380 276 SMART CRAL_TRIO_N_2 69 94 IPR011074 -
Seca12g06380 276 MobiDBLite consensus disorder prediction 8 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06380 Seca-Chr12 155774002 155781830 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06380 73 261 Acyl Lipid Metabolism Gene Families AT5G47730 28.293 1.22e-13 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06380 - - gmx:548015 413.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06380 12 155774002 155781830 Seca12g06380 12 155774002 155781830 ECH
Seca12g06380 12 155774002 155781830 Seca4g01807 4 29914961 29917574 PCT