Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01779 ATGGCTAGGGTCTTGGCTCAGTCAATCAATGTCCCTGGCCTAGTGGCTGGGCAAAGGCATGGTCAACATAAGGGATCAGGAAAATCAAAAAGGTCAACCAAAATGCTGTGTGCTTTACGATCAAGTGAATTAAGAATGATGGGTTTCTCAGGACTTCGTACTTTAAATCCTTTGGATAGTATGCGAAGGTCTGGACTAGATTTTCACTCTAAGGTAGCAATCGCAACTTCTTCACGGCGTGCAAGGGCCACCAGATGCATACCCAAAGCCATGTTTGAGCGTTTCACGGAGAAAGCAATCAAAGTAATCATGTTAGCCCAGGAGGAAGCTAGACGTCTTGGTCACAATTTTGTTGGAACAGAGCAAATTCTATTGGGTCTTATTGGTGAAGGCACTGGTATTGCTGCTAAGGTTCTAAAGTCTATGGGAATCAACCTTAAAGATGCACGTGTAGAAGTGGAGAAGATAATTGGAAGGGGTAGTGGATTTGTTGCTGTTGAGATTCCTTTTACTCCTCGTGCAAAGCGAGTTTTGGAACTTTCATTGGAGGAAGCTCGCCAACTTGGACACAATTACATCGGATCTGAGCACTTGCTTCTAGGTCTTCTTCGAGAGGGTGAGGGTGTAGCAGCACGTGTTCTTGAAAACCTGGGTGCTGATCCTACTAATATTCGCACACAGGTTATTCGCATGGTGGGTGAGAGTGCTGACAGTGTGACTGCTACTGTTGGCTCAGGAAGTAGTGGCAATAAGATGCCAACTTTGGAGGAGTATGGCACCAATTTGACCAAGCTAGCGGAGGAGGGAAAGTTGGATCCTGTTGTGGGAAGGCAGCCGCAAATTGAACGTGTCACTCAAATTTTAGGCCGTCGCACCAAAAATAATCCTTGCCTTATTGGAGAACCTGGTGTTGGGAAGACAGCAATTGCTGAAGGTCTTGCTCAGCGGATTGCAAACGGTGATGTACCTGAAACCATAGAGGGCAAAAAGGTAATAACCCTCGACATGGGTCTGCTTGTAGCTGGAACTAAATATCGTGGTGAGTTTGAGGAGAGGTTGAAGAAATTGATGGAAGAAATCAAACAAAGTGATGAGATAATACTTTTTATCGATGAAGTACACACACTAATTGGAGCAGGAGCAGCTGAAGGGGCAATTGATGCTGCTAACATACTGAAACCAGCACTTGCAAGAGGTGAATTACAGTGTATTGGAGCCACAACATTGGACGAATACAGGAAACACATTGAAAAAGATCCAGCTTTGGAGAGACGATTCCAGCCGGTTAAAGTACCAGAGCCAACAGTAGATGAAACTATACAAATACTGAAAGGACTTAGAGAACGTTATGAGATTCACCACAAGCTCCGCTATACTGATGAGGCTCTTGTAGCTGCTGCGCAGCTGTCATACCAGTATATCAGTGATCGATTTTTGCCTGACAAAGCTATAGATTTGATTGATGAAGCTGGTTCACGTGTCCGTCTTCAACATGCACAGTTACCTGAAGAAGCAAAGGAGCTTGATAAGGAAGTCAGACAAATTATTAAGGAGAAAGAAGAAGCTGTTCGCAACCAAGACTTTGAAAAGGCTGGAGAGCTACGAGATAGAGAAATGGATCTCAAGGCACAGATCTCATCACTTGTAGAGAAAGGCAAGGAGATGAGCAAAGCAGAGAGTGAGGCAGGAGATGAAGGTCCTGTTGTGACTGAAGTTGACATACAACATATTGTCTCTTCTTGGACTGGTATTCCTGTTGAAAAAGTCTCAACAGATGAATCTGATCGCCTCCTCAAGATGGAAGAGACTTTACACAAGCGAGTCATTGGTCAAGATGAAGCAGTGAAAGCCATTAGTCGGGCTATCCGTCGAGCCCGGGTTGGATTGAAGAACCCTAACCGTCCAATTGCCAGCTTCATCTTTTCTGGTCCAACTGGTGTGGGGAAGTCTGAATTGGCCAAAGCCTTGGCTGCATACTACTTTGGCTCTGAAGAAGCTATGATTCGGCTTGACATGAGTGAATTTATGGAAAGGCACACTGTCTCCAAACTTATTGGTTCACCTCCTGGATATGTTGGTTACACTGAAGGTGGTCAATTGACCGAGGCAGTCCGGCGTCGTCCTTACACTGTTGTACTCTTTGATGAGATTGAGAAAGCCCATCCTGATGTTTTCAACATGATGCTTCAGATCCTGGAAGATGGAAGACTAACAGACAGTAAGGGCAGAACTGTGGATTTCAAAAACACACTTCTTATAATGACATCCAATGTTGGAAGCAGTGTGATTGAGAAAGGAGGCCGCCGAATTGGATTTGATCTGGATTATGATGAGAAGGATAGCAGTTATAATAGAATAAAGAGCTTGGTGACTGAGGAGCTAAAACAATACTTCAGGCCAGAATTTTTGAATAGGTTGGATGAAATGATTGTCTTTAGGCAACTCACAAAACTCGAGGTGAAGGAGATAGCTGACATAATGCTCAAGGAAGTGTTCCAGAGACTGAAGGCCAAAGATATTGAACTTCAAGTGACAGAAAGATTTAGGGACAGAGTGGTTGAGGAAGGTTATAATCCTAGTTATGGAGCTAGGCCTCTTAGAAGAGCCATCATGCGACTTTTAGAAGACAGCATGGCTGAGAAGATGCTTGCTAGGGAGATCAAAGAGGGAGACTCTGTTATAGTTGATGTTGATTCTGACGGTAATGTGATTGTGCTCAATGGTAGCAGCGGTACCCCCGAGTCTCTACCAGAGGCTCTTCCTGTATAA 2769 0.4438 MARVLAQSINVPGLVAGQRHGQHKGSGKSKRSTKMLCALRSSELRMMGFSGLRTLNPLDSMRRSGLDFHSKVAIATSSRRARATRCIPKAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPTNIRTQVIRMVGESADSVTATVGSGSSGNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPTVDETIQILKGLRERYEIHHKLRYTDEALVAAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLQHAQLPEEAKELDKEVRQIIKEKEEAVRNQDFEKAGELRDREMDLKAQISSLVEKGKEMSKAESEAGDEGPVVTEVDIQHIVSSWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFQRLKAKDIELQVTERFRDRVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDVDSDGNVIVLNGSSGTPESLPEALPV. 923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01779 922 SMART ClpB_D2_small_2 815 905 IPR019489 -
Seca4g01779 922 Pfam AAA domain (Cdc48 subfamily) 634 808 IPR003959 GO:0005524|GO:0016887
Seca4g01779 922 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 252 530 IPR027417 -
Seca4g01779 922 Pfam C-terminal, D2-small domain, of ClpB protein 815 895 IPR019489 -
Seca4g01779 922 Pfam ATPase family associated with various cellular activities (AAA) 297 413 IPR003959 GO:0005524|GO:0016887
Seca4g01779 922 Coils Coil 346 366 - -
Seca4g01779 922 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 746 760 IPR001270 GO:0005524
Seca4g01779 922 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 713 731 IPR001270 GO:0005524
Seca4g01779 922 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 639 657 IPR001270 GO:0005524
Seca4g01779 922 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 684 702 IPR001270 GO:0005524
Seca4g01779 922 Gene3D - 587 813 IPR027417 -
Seca4g01779 922 ProSiteProfiles Clp repeat (R) domain profile. 92 234 IPR004176 -
Seca4g01779 922 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 584 902 IPR027417 -
Seca4g01779 922 Gene3D - 437 581 - -
Seca4g01779 922 Pfam Clp amino terminal domain, pathogenicity island component 182 233 IPR004176 -
Seca4g01779 922 Pfam Clp amino terminal domain, pathogenicity island component 106 158 IPR004176 -
Seca4g01779 922 FunFam ATP-dependent Clp protease ATP-binding subunit 436 521 - -
Seca4g01779 922 ProSiteProfiles UVR domain profile. 509 544 IPR001943 GO:0005515
Seca4g01779 922 Gene3D UVR domain 501 565 - -
Seca4g01779 922 SMART AAA_5 292 432 IPR003593 GO:0016887
Seca4g01779 922 SMART AAA_5 635 816 IPR003593 GO:0016887
Seca4g01779 922 ProSitePatterns Chaperonins clpA/B signature 1. 387 399 IPR018368 GO:0005524
Seca4g01779 922 FunFam Chaperone clpB 1, putative 243 435 - -
Seca4g01779 922 Gene3D - 91 240 IPR036628 -
Seca4g01779 922 PANTHER ATP-DEPENDENT CLP PROTEASE 96 902 - -
Seca4g01779 922 SUPERFAMILY Double Clp-N motif 93 234 IPR036628 -
Seca4g01779 922 Pfam AAA lid domain 435 536 IPR041546 -
Seca4g01779 922 ProSitePatterns Chaperonins clpA/B signature 2. 669 687 IPR028299 -
Seca4g01779 922 Coils Coil 505 525 - -
Seca4g01779 922 CDD RecA-like_ClpB_Hsp104-like 596 812 - -
Seca4g01779 922 Gene3D - 815 912 - -
Seca4g01779 922 FunFam ATP-dependent chaperone ClpB 815 908 - -
Seca4g01779 922 CDD AAA 275 427 - -
Seca4g01779 922 FunFam ATP-dependent Clp protease ATP-binding subunit ClpC 91 239 - -
Seca4g01779 922 Gene3D - 243 435 IPR027417 -
Seca4g01779 922 FunFam ATP-dependent Clp protease subunit 588 813 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01779 Seca-Chr4 29208132 29216741 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01779 K03696 - gmx:100804035 1690.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01779 4 29208132 29216741 Seca4g01779 4 29208132 29216741 ECH
Seca12g06393 12 155957957 155959486 Seca4g01779 4 29208132 29216741 PCT