Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06393 ATGTACTTCCAGTTACCTGAAGAAGCGAGAGAGCTTGACAAGGAGGTCAGGCAGATTGTGAAGGAGAAAGAAGAAGCTGTTCGCAACCAAGACTTTGAGAAGGCTGGAGAGCTGCGAGACAAAGAAATGGATCTTAAGGCACAGATCTCAGCACTTGTAGAAAAAGGCAAGGAGATGAGCAAGGCAGAGAGTGAGGCGGGAGATGAAGGTCCAGTTGTGACTGAAGTTGTCATACAGCATATTGTCTCTTCCTGGACTGGTATTCCCGTTGAGAAAGTCTCAACAGATGAATCTGATCGCCTCCTCAAGATGGAAGAGACTTTACACAAGCTAACAGACAGTAAGGGAAGAACTGTGGACTTCAAGAACACGCTTCTTATAATGACATCAAATGTTGGAAGCAGTGTAATTGAGAAAGGAGGTCGTCGGATAGGATTTGACCTTGATTATGATGAGAAGGATAGCAGTTGTAATAGAATCAAGAGCTTGAGAGATTTAGGGAGAGTGGTTGAGGAAGGTTATAATCCTAGTTATGGTGCTAGGCCTCTAAGAAGAGCCATCATGCGACTTTTAGAGAACAGCATGGCTGAGAAGATGCTTGCTGGAGAGATTAAAGAGGGCGACTCTGTTATTGTGGATGCTGATTCCGATGGTAATGTGATTGTGCTCAACGGTAGTAGTGGTGCCCCAGAGACACTCCCAGAAGCTCTTCCCGTGTAG 720 0.4542 MYFQLPEEARELDKEVRQIVKEKEEAVRNQDFEKAGELRDKEMDLKAQISALVEKGKEMSKAESEAGDEGPVVTEVVIQHIVSSWTGIPVEKVSTDESDRLLKMEETLHKLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSCNRIKSLRDLGRVVEEGYNPSYGARPLRRAIMRLLENSMAEKMLAGEIKEGDSVIVDADSDGNVIVLNGSSGAPETLPEALPV. 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06393 239 SMART ClpB_D2_small_2 148 222 IPR019489 -
Seca12g06393 239 Pfam UvrB/uvrC motif 13 48 IPR001943 GO:0005515
Seca12g06393 239 Gene3D - 150 229 - -
Seca12g06393 239 Pfam C-terminal, D2-small domain, of ClpB protein 169 212 IPR019489 -
Seca12g06393 239 Coils Coil 9 29 - -
Seca12g06393 239 Pfam AAA domain (Cdc48 subfamily) 97 143 IPR003959 GO:0005524|GO:0016887
Seca12g06393 239 PANTHER ATP-DEPENDENT CLP PROTEASE 169 219 - -
Seca12g06393 239 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 91 219 IPR027417 -
Seca12g06393 239 Gene3D UVR domain 6 62 - -
Seca12g06393 239 ProSiteProfiles UVR domain profile. 13 48 IPR001943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06393 Seca-Chr12 155957957 155959486 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06393 K03696 - gmx:100795228 202.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06393 12 155957957 155959486 Seca4g01779 4 29208132 29216741 PCT