Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01741 ATGGGGGAGGACGAAAAGAAATCAGAGGAGAAAAAACCAGAGGAACCCAAACAGACAGAAGAAGCCAAGCCTGCTGAAAAACCAGACGAATCAAAAAACGATGACAAAGAATCCAAAGCCGAAGAAGCTGCTCCTCCTCCGCCGCCACCACCAGAGATTGTGCTCAAAGTGTTCATGCATTGTGAAGGTTGTGCTCGCAAGGTTCGTCGGTCCCTCAAAGGATTCCCAGGAGTTGAAGATGTAATCACGGATTGCAAATCTCACAAGGTGGTAGTTAAAGGAGACAAAGCAGATCCACTGAAGGTTCTAGAAAGAGTACAGAGGAAGAGTCACAGGCAAGTTGAGCTTCTTTCTCCCATCCCAAAACCTCCAGAGGAGAAAAAACTGCCAGAACAAGAGGCGAAACCCGAGCCTGAAGAGAAGAAAGAAGAGGTGCCTCAGATTGTGACAGTTATTCTGAAAGTTCACATGCATTGCGAAGCTTGTGCACAGGAAATGAAAAGACGCATACAGAGAATGAAAGGTGTGGAGACAGTGGAACCCGATCTGAAGAACTCGCAGGTAACCGTCAAGGGCGTGTATGATCCTGCTATGTTGGTTGAATATGTGCACAAGCGATTTGGGAAGCATGCAGTGATTGTGAAGCAAGAACCAGAGAAGAAAGAGAAAGCGGAGGAAGCTAAAGAGGAGAAGAAAATGGAGGAAGGTGAGAAAGAGAAGAAGAAGAGTGAAGGCGAGGAAAACAAGGAGGAGAAGAATGAAGAGGAGGAAAACAAGGAGAAGAAAGGAGATGAAGACAAAGAGGGTGATGCAAAGCCAGAGAAGGAGGAAGCGGTTGCTACAGAAGAGACGAACAAGGTGACGGAGATGAAGAAAAACGAATATTACTATACCCCACAGAGGTATGGGATGGACTTGTATGCATATCCAGCATACTCTGCGTATTACCAGTACCACGCGTACCCACCGCAGATGTTCAGTGATGAGAACCCAAATGCTTGTTCTGTCATGTAA 1014 0.4635 MGEDEKKSEEKKPEEPKQTEEAKPAEKPDESKNDDKESKAEEAAPPPPPPPEIVLKVFMHCEGCARKVRRSLKGFPGVEDVITDCKSHKVVVKGDKADPLKVLERVQRKSHRQVELLSPIPKPPEEKKLPEQEAKPEPEEKKEEVPQIVTVILKVHMHCEACAQEMKRRIQRMKGVETVEPDLKNSQVTVKGVYDPAMLVEYVHKRFGKHAVIVKQEPEKKEKAEEAKEEKKMEEGEKEKKKSEGEENKEEKNEEEENKEKKGDEDKEGDAKPEKEEAVATEETNKVTEMKKNEYYYTPQRYGMDLYAYPAYSAYYQYHAYPPQMFSDENPNACSVM. 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01741 337 MobiDBLite consensus disorder prediction 111 143 - -
Seca4g01741 337 MobiDBLite consensus disorder prediction 1 42 - -
Seca4g01741 337 Coils Coil 219 262 - -
Seca4g01741 337 MobiDBLite consensus disorder prediction 217 289 - -
Seca4g01741 337 MobiDBLite consensus disorder prediction 1 54 - -
Seca4g01741 337 CDD HMA 59 115 IPR006121 GO:0046872
Seca4g01741 337 SUPERFAMILY HMA, heavy metal-associated domain 146 217 IPR036163 GO:0046872
Seca4g01741 337 SUPERFAMILY HMA, heavy metal-associated domain 54 109 IPR036163 GO:0046872
Seca4g01741 337 ProSiteProfiles Heavy-metal-associated domain profile. 148 212 IPR006121 GO:0046872
Seca4g01741 337 ProSiteProfiles Heavy-metal-associated domain profile. 50 114 IPR006121 GO:0046872
Seca4g01741 337 CDD HMA 153 211 IPR006121 GO:0046872
Seca4g01741 337 MobiDBLite consensus disorder prediction 121 143 - -
Seca4g01741 337 Gene3D - 146 214 - -
Seca4g01741 337 Gene3D - 50 122 - -
Seca4g01741 337 Pfam Heavy-metal-associated domain 55 108 IPR006121 GO:0046872
Seca4g01741 337 Pfam Heavy-metal-associated domain 154 207 IPR006121 GO:0046872
Seca4g01741 337 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 7 36 337 IPR044577 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01741 Seca-Chr4 28215859 28217899 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01741 - - gmx:100787932 308.145
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01741 4 28215859 28217899 Seca4g01741 4 28215859 28217899 ECH
Seca12g06427 12 156337813 156339701 Seca4g01741 4 28215859 28217899 PCT