Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06427 ATGCATTGTGAAGGTTGTGCTCGCAAGGTTCGTAGGTCCCTCAGAGGATTCCCAGGGGTTGAGGATGTAATCACTGATTGCAAATCTCACAAGGTGGTTGTTAAGGGAGAAAAAGCGGATCCACTGAAGGTTCTGGAGAGAGTACAGAGGAAGAGTCATAGACAGGTTGAGCTTCTCTCTCCTATCCCAAAACCACCAGCAGAGGAGGAGAAAAAACCCGAAGAGAAAGAGAAACCCAAGCCAGAGGAGAAGAAAGAAGAGCCTCGGGTTATCACAGTTGTTCTTAAAGTTCACATGCATTGTGAAGCTTGTTCTCAGGAAATCAAGAGACGTATTGAGAGAATTAAAGGAGTGGAATCAGCAGAGCCTGATCTGAAGAACTCGCTGGTGAGCGTGAAGGGAGTGTTTGAGACTACCAAGTTGGTGGAAACAGTGTATAAGAGGACTGGGAAACACGCAGTGGTAGTGAAGCAAGAGCCAGCAGAGAAAAAAGAAGAAGCAAAAGAAGGCAAAGAGGAGAAGAAAGGTGAGGAAGCTGACAAGGATCAGAAGAAAGGGAGTGAGGAAGGAGGTGGAGAAGAGAACAAGGAGAAGAAAGAAGCAGCAGAAGGGGAAGAGGCCAAAGCAGCTGAGGGAACCACAGAAGAAACCAAGGTGGTGGAAGTGAAGAAGAATGAGTACTATTACAACCCACCAAGGTATGGCATGGAGTTCTATGCATATCCAGGGCCAGCATACCCACCCCAGATCTTCAGTGATGAGAACCCCAATGCTTGTTCTGTCATGTAA 789 0.4702 MHCEGCARKVRRSLRGFPGVEDVITDCKSHKVVVKGEKADPLKVLERVQRKSHRQVELLSPIPKPPAEEEKKPEEKEKPKPEEKKEEPRVITVVLKVHMHCEACSQEIKRRIERIKGVESAEPDLKNSLVSVKGVFETTKLVETVYKRTGKHAVVVKQEPAEKKEEAKEGKEEKKGEEADKDQKKGSEEGGGEENKEKKEAAEGEEAKAAEGTTEETKVVEVKKNEYYYNPPRYGMEFYAYPGPAYPPQIFSDENPNACSVM. 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06427 262 MobiDBLite consensus disorder prediction 64 87 - -
Seca12g06427 262 Pfam Heavy-metal-associated domain 95 152 IPR006121 GO:0046872
Seca12g06427 262 Pfam Heavy-metal-associated domain 1 50 IPR006121 GO:0046872
Seca12g06427 262 Gene3D - 88 155 - -
Seca12g06427 262 MobiDBLite consensus disorder prediction 52 87 - -
Seca12g06427 262 SUPERFAMILY HMA, heavy metal-associated domain 89 159 IPR036163 GO:0046872
Seca12g06427 262 SUPERFAMILY HMA, heavy metal-associated domain 1 51 IPR036163 GO:0046872
Seca12g06427 262 ProSiteProfiles Heavy-metal-associated domain profile. 90 154 IPR006121 GO:0046872
Seca12g06427 262 CDD HMA 1 57 IPR006121 GO:0046872
Seca12g06427 262 CDD HMA 94 153 IPR006121 GO:0046872
Seca12g06427 262 Gene3D - 1 64 - -
Seca12g06427 262 MobiDBLite consensus disorder prediction 157 223 - -
Seca12g06427 262 ProSiteProfiles Heavy-metal-associated domain profile. 1 56 IPR006121 GO:0046872
Seca12g06427 262 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 7 1 262 IPR044577 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06427 Seca-Chr12 156337813 156339701 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06427 - - gmx:100796289 301.982
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06427 12 156337813 156339701 Seca12g06427 12 156337813 156339701 ECH
Seca12g06427 12 156337813 156339701 Seca4g01741 4 28215859 28217899 PCT