Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06438 ATGTCAAGTCACGGTAGCTCTTCTCGAAGGAGCGGTTCGTTGACAAATAGTCCTACGCGGGGAAAGAAGAAGGCCTCTGAGTCTTCAACGCCTGAGTCCACTTCTCGTAAATCATTTGCGCCTATGCGCACCACGGGAGAGCGAACTGTGAAATCATTGCGACTTTCAAAGGCATTGACAGTACCCGACACAACAACTGTCTATGAAGCTTGCCGTCGGATGGCTGCCCGCAAAGTAGATGCTCTATTACTAACTGATTCCAATGCTTTGCTCTGTGGAATCCTCACAGATAAGGATATTGCAACAAGAGTTATTGCCCGTGAGGTTAATCTTGAAGACACACCTGTTTCCAAGGTGATGACAAGGAATCCAGTATTTGTCCTTACTGACACTCTTGCTGTGGAAGCCCTCCAAAAAATGGTGCAAGGGAGATTCAGACATTTACCTGTGGTGGAGAATGGAGAAGTTGTTGCCATCCTTGACATAGCGAAGTGTTTGTATGATGCCATTGCCCGTATGGAAAGGGCAGCTGAGAAAGGAAAGGCAATAGCGGCAGCTGTTGAAGGTATCGAAAAACAGTGGGGAGCACCTGCTTCTGGCTCTAATTCATCATTCATTGAGACTCTTCGCGAGCAGATATTTAAGCCATCATTGTCTACAATTATTCCTGAGAATTCAAAGGTTGTAACAGTTTCACCAACTGACTCAGTTTTGACAACAACGAAGAAGATGCTTGAAGTTCGTGCAAATTCTGCCATTGTGACGGTTGATGACAAACCTTGTGGTATCCTTACTTTCATCGAAATAATTTTGATGGACTATAATCTGCATACAAATTTCAGTTCAAAGGATATCTTGATGCGGGTAATAGCACACAATCTTCCTCCATCGTTGACTCTTATTGAGAAGGTCATGACTTCAAATCCAGAATGTGCAGCAATTGATACACCGATTGTTGATGCACTTCACAGTATGCATGATGGAAAATTTTTACATCTTCCTGTTGTTGATAAAGATGGCATTGTTGTTGCTGTGGTTGATGTGATTCATATCACTCATGCTGCTGTGGCGACTGCTAGTCAGGTTGGAAATACCGCTTCTAATTTGAACAATGAAGCTGCCAACTCCATGATACAGAAGTTTTGGGATTCGGCCATGGCCTTAACTTCAAATGATGACGATGAAGATTCACAAAGCGACACTTCCTTGAAAATGATTTCTGAGGGAGGAGAAACAGGGAGATCCATTCCTTATCTTTCTTCAACCATGCAGAATTCATTTTCCTTCAAAATACAAGATAAGAAGGGCAGATTGCATAGGTTCACATGCGATACTCGCAGCTTGACAGAGGTTATAACATCCATCATTCAGAGAGTCGGTAATGATATTGAACCCAAGAACCTGCCTCAAATTCTGTACGAAGATGAAGAACATGATAAAGTTGTACTGGCTTCAGACAGTGATCTTGTTGCAGCTGTGGACCACGCAAAGACGGCTGGTATGAAGGGATTGAGATTGCACTTAGATTACTCAGGAACACGGGGTTATGGAACTGATTCAAGTTCAAGAAGTTTAGAACATGCTGATTCAAAAGCATGGGCCTCTGCATATAGTGCTGTTGCTGCTGGAGCTGCAATAGTTGTTGGCATAGGCCTATTAGCGTTCTTGAGGCGAAGTTAA 1680 0.4321 MSSHGSSSRRSGSLTNSPTRGKKKASESSTPESTSRKSFAPMRTTGERTVKSLRLSKALTVPDTTTVYEACRRMAARKVDALLLTDSNALLCGILTDKDIATRVIAREVNLEDTPVSKVMTRNPVFVLTDTLAVEALQKMVQGRFRHLPVVENGEVVAILDIAKCLYDAIARMERAAEKGKAIAAAVEGIEKQWGAPASGSNSSFIETLREQIFKPSLSTIIPENSKVVTVSPTDSVLTTTKKMLEVRANSAIVTVDDKPCGILTFIEIILMDYNLHTNFSSKDILMRVIAHNLPPSLTLIEKVMTSNPECAAIDTPIVDALHSMHDGKFLHLPVVDKDGIVVAVVDVIHITHAAVATASQVGNTASNLNNEAANSMIQKFWDSAMALTSNDDDEDSQSDTSLKMISEGGETGRSIPYLSSTMQNSFSFKIQDKKGRLHRFTCDTRSLTEVITSIIQRVGNDIEPKNLPQILYEDEEHDKVVLASDSDLVAAVDHAKTAGMKGLRLHLDYSGTRGYGTDSSSRSLEHADSKAWASAYSAVAAGAAIVVGIGLLAFLRRS. 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06438 559 MobiDBLite consensus disorder prediction 1 47 - -
Seca12g06438 559 CDD CBS_pair_MUG70_2 225 357 - -
Seca12g06438 559 CDD PB1_MUG70 427 511 - -
Seca12g06438 559 ProSiteProfiles CBS domain profile. 305 362 IPR000644 -
Seca12g06438 559 MobiDBLite consensus disorder prediction 389 409 - -
Seca12g06438 559 Gene3D - 216 375 IPR046342 -
Seca12g06438 559 ProSiteProfiles PB1 domain profile. 424 511 IPR000270 GO:0005515
Seca12g06438 559 Pfam CBS domain 225 270 IPR000644 -
Seca12g06438 559 Pfam CBS domain 302 354 IPR000644 -
Seca12g06438 559 Pfam CBS domain 56 102 IPR000644 -
Seca12g06438 559 Pfam CBS domain 116 160 IPR000644 -
Seca12g06438 559 MobiDBLite consensus disorder prediction 1 24 - -
Seca12g06438 559 Pfam PB1 domain 427 509 IPR000270 GO:0005515
Seca12g06438 559 ProSiteProfiles CBS domain profile. 120 178 IPR000644 -
Seca12g06438 559 Gene3D - 26 185 IPR046342 -
Seca12g06438 559 SUPERFAMILY CBS-domain pair 203 354 IPR046342 -
Seca12g06438 559 SMART cbs_1 123 167 IPR000644 -
Seca12g06438 559 SMART cbs_1 57 105 IPR000644 -
Seca12g06438 559 SMART cbs_1 308 356 IPR000644 -
Seca12g06438 559 SMART cbs_1 227 271 IPR000644 -
Seca12g06438 559 ProSiteProfiles CBS domain profile. 54 114 IPR000644 -
Seca12g06438 559 SUPERFAMILY CBS-domain pair 47 163 IPR046342 -
Seca12g06438 559 CDD CBS_pair_MUG70_1 55 171 - -
Seca12g06438 559 SUPERFAMILY CAD & PB1 domains 419 513 - -
Seca12g06438 559 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 33 497 - -
Seca12g06438 559 SMART PB1_new 426 511 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06438 Seca-Chr12 156456523 156462408 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06438 - - gmx:100783514 818.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06438 12 156456523 156462408 Seca12g06438 12 156456523 156462408 ECH
Seca4g01727 4 27963275 27971851 Seca12g06438 12 156456523 156462408 PCT