Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01002 ATGGCTAACATGGTTATGGCTTCCTCCAAATCTCTAATTCCAGTTCCCACCAATTCCCTTTCTCCCACACCACCCAAAGTACCCACTCTCCAAATTTCACTCCCCAGGGTCCCAACCCTCAAACTCAAACTCCCACCAATCTCAAAGCTGAAATCCCTTTCCCTGTTAGGAGTAGCCGCAAGCTCATTGGCCTTAGCCCCACCCTCCCTTGCAGCAGAAATCGAAAAAGCAGCTCTTTTTGATTTCAACCTAACCCTCCCAATCATAATGGCGGAGTTTCTGCTTCTCATGGTTGCTTTGGACAAGATATACTTCACCCCACTTGGGAAATTCATGGACGAAAGGGACTCAGCAATCAGGGAGAAGCTGAACAGTGTGAAGGACACGTCAGCAGAGGTGAAGCAGTTGGAGGAACAAGCAAATGCAGTGATGAAAGCTGCTCGTGCTGAGATATCAGCAGCTCTGAATAAGATGAAGAAGGAGACACAAGCTGAGGTTGAGCAGAAGCTTGCTGAGGGAAGGCAGAAAGTGGATGCAGAATTGCAGGAAGCTTTGGCTAACTTGGAGAAGCAAAAGGCAGAGACCATTAAGGCCCTTGATTCCCAAATTACTGCTCTTAGCCAGGATATTGTTAAAAAGGTTCTTCCTACTGCTTAG 657 0.4734 MANMVMASSKSLIPVPTNSLSPTPPKVPTLQISLPRVPTLKLKLPPISKLKSLSLLGVAASSLALAPPSLAAEIEKAALFDFNLTLPIIMAEFLLLMVALDKIYFTPLGKFMDERDSAIREKLNSVKDTSAEVKQLEEQANAVMKAARAEISAALNKMKKETQAEVEQKLAEGRQKVDAELQEALANLEKQKAETIKALDSQITALSQDIVKKVLPTA. 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01002 218 Coils Coil 174 198 - -
Seca4g01002 218 Coils Coil 119 172 - -
Seca4g01002 218 Hamap ATP synthase subunit b [atpF]. 80 217 IPR002146 GO:0015078|GO:0015986|GO:0045263
Seca4g01002 218 Pfam ATP synthase B/B' CF(0) 86 215 IPR002146 GO:0015078|GO:0015986|GO:0045263
Seca4g01002 218 CDD ATP-synt_Fo_b 85 215 - -
Seca4g01002 218 PANTHER ATP SYNTHASE SUBUNIT B', CHLOROPLASTIC 68 217 - -
Seca4g01002 218 Hamap ATP synthase subunit b' [atpF2]. 79 216 IPR034679 GO:0015078|GO:0015986|GO:0045263
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01002 Seca-Chr4 16072717 16073373 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01002 K02109 - gmx:100817028 277.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01002 4 16072717 16073373 Seca4g01002 4 16072717 16073373 ECH
Seca4g01002 4 16072717 16073373 Seca4g00999 4 16067951 16070406 ECH
Seca4g00999 4 16067951 16070406 Seca4g01002 4 16072717 16073373 PCT