Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00999 ATGGGTGAGAGTCATAGTAGGTTGATTGTTTCTGACGAGAGCCAATTTTCTTCATTGATGATCGTCGATCGCAACTTTTCCTACGATACTCATCCTTCCCAATCCCTCAGGCTCTCTGTCCTCAAATTGGATGCCTCTTCCTTCTATGTTGAAGTTGCAAGGACAGCAACTGTTGCAGAACTCAAACAGGCGGTGGAGGCGGCTTTTAGTTACATGCCTCAGAAGGGGACAGGAAAAATATCATGGCCACATGTTTGGGGGCAATTTTGTTTATGCTATGATGGACACAAGCTAGTTACAGACACAGATTATCTTAGAGATTATGGCATCAGGGATGGTGACCAGCTTCATTTCATGCGCCATGTATCCAACACTTGTAGTTTTCAAAAAATGCGGTTGAAGAAACGTGTTGTCAATTTGAAACCACGCAGGAGGTACGAAGTTAAAAAATATTCAGGTTTTTTGGACCAACATTACTCTGTTTGCCTTGTTGCACTAGTCACTAGATGA 510 0.4275 MGESHSRLIVSDESQFSSLMIVDRNFSYDTHPSQSLRLSVLKLDASSFYVEVARTATVAELKQAVEAAFSYMPQKGTGKISWPHVWGQFCLCYDGHKLVTDTDYLRDYGIRDGDQLHFMRHVSNTCSFQKMRLKKRVVNLKPRRRYEVKKYSGFLDQHYSVCLVALVTR. 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00999 169 SUPERFAMILY Ubiquitin-like 30 124 IPR029071 -
Seca4g00999 169 CDD Ubl_SNRNP25 35 121 IPR040610 -
Seca4g00999 169 PANTHER U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 25 KDA PROTEIN 4 151 IPR039690 GO:0000398|GO:0005689
Seca4g00999 169 Gene3D - 30 129 - -
Seca4g00999 169 ProSiteProfiles Ubiquitin domain profile. 36 119 IPR000626 GO:0005515
Seca4g00999 169 Pfam Ubiquitin-like domain 36 122 IPR040610 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00999 Seca-Chr4 16067951 16070406 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00999 - - ahf:112770563 187.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00999 4 16067951 16070406 Seca4g00999 4 16067951 16070406 ECH
Seca4g01002 4 16072717 16073373 Seca4g00999 4 16067951 16070406 ECH
Seca4g00999 4 16067951 16070406 Seca4g01002 4 16072717 16073373 PCT