Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05000 ATGGAGACTATCATCACAAGCATGGTAGCTGAGAAGCCAGTGGTGATATTCAGCAAGAGCAGCTGTTGTTTGAGCCACTCTGTGACATCACTGATACGTAGCTTTGGGGCAAATCCAACAGTTTATGAGCTTGATAATTTGACAAATGGAGAACAAATTGAGAGTGCGTTGCTTCAAATGGGGTGCAATCCAAGTGTACCTGCTGTGTTCATAGGACAACAATTCACTGAACTCTCTCTAGCAATGGATATGTTGGCAACATTGACTGTTGACAAGCCAGTGGTGATCTTCAGCAAGAGCACTTGTTGCATGAGCCACACTGTGAAGGCTCTCATAAGCAGTTTTGGTGCCAACCCTGCAATTATTGAGGTTGACAAAATGCCAAATGGGCACCAAGTAGAAAGGGCACTCCTACAATTGGGTTGCCGCCCAAGTGTACCTGCTGTGTTCATAGGACAACAATTCATTGGTGGTGCTGATGAAGTCATAAGCCTCAATGTTCAAAACAAGCTTGCCCAATTGCTTCTAAGGGCTAGAGCTATATTTCTCTGGAGTAGGTAG 561 0.4474 METIITSMVAEKPVVIFSKSSCCLSHSVTSLIRSFGANPTVYELDNLTNGEQIESALLQMGCNPSVPAVFIGQQFTELSLAMDMLATLTVDKPVVIFSKSTCCMSHTVKALISSFGANPAIIEVDKMPNGHQVERALLQLGCRPSVPAVFIGQQFIGGADEVISLNVQNKLAQLLLRARAIFLWSR. 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05000 186 Pfam Glutaredoxin 14 75 IPR002109 -
Seca2g05000 186 Pfam Glutaredoxin 94 156 IPR002109 -
Seca2g05000 186 NCBIfam glutaredoxin-like family 87 182 IPR011905 -
Seca2g05000 186 SUPERFAMILY Thioredoxin-like 3 75 IPR036249 -
Seca2g05000 186 CDD GRX_GRXh_1_2_like 93 174 - -
Seca2g05000 186 ProSiteProfiles Glutaredoxin domain profile. 82 182 - -
Seca2g05000 186 CDD GRX_GRXh_1_2_like 13 75 - -
Seca2g05000 186 ProSiteProfiles Glutaredoxin domain profile. 2 75 - -
Seca2g05000 186 SUPERFAMILY Thioredoxin-like 83 179 IPR036249 -
Seca2g05000 186 PRINTS Glutaredoxin signature 139 152 IPR014025 -
Seca2g05000 186 PRINTS Glutaredoxin signature 94 112 IPR014025 -
Seca2g05000 186 PRINTS Glutaredoxin signature 153 166 IPR014025 -
Seca2g05000 186 PANTHER GLUTAREDOXIN 5 75 IPR011905 -
Seca2g05000 186 Gene3D Glutaredoxin 2 84 - -
Seca2g05000 186 Gene3D Glutaredoxin 85 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05000 Seca-Chr2 136662911 136672838 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05000 5 75 Miscellaneous Gene Families AT4G15690 56.338 1.31e-26 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05000 K03676 - gmx:100803979 185.652
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g05000 2 136662911 136672838 Seca2g05000 2 136662911 136672838 ECH
Seca2g04998 2 136646673 136649366 Seca2g05000 2 136662911 136672838 PCT
Seca2g05000 2 136662911 136672838 Seca2g05000 2 136662911 136672838 PCT