Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04998 ATGTGCCACAGCATCAAGCAACTTTTCTATGAGCTTGGAGCAAGCCCTGCAGTGCATGAGCTTGACAATGATTCCTATGGGAGGGAAATGGAATGGGCTTTGAGGGGTATGGGATGTAATCCTTCAGTCCCAGCAGTGTTCATAGGTAATAGCAGGTACTTGATCAGTATCAGGATGGACAAGGTGATGAGGTTGGCCTCTGAAAAGGGTGTGGTGATTTTCACCAAGAGCTCTTGTTGCCTCTGCTATGCAGTCAACATTCTGTTTCAAGAACTTGGGGTGAGGCCTGTGGTGCATGAAATTGACCAAGACCCTGAAGGCAGGGAAATGGAGAAAGCTCTTTTGAGGTTGGGCTGTACTGCACCTGTCCCAGCTGTGTTCATAGGAGGGAAATTAATGGGATCCACCAATGAAGTCATGTCCCTCCACCTAAGTGGTTCACTCACTCAATTGCTGAAACCATATCAAGCTTCTTTATCTTGA 483 0.47 MCHSIKQLFYELGASPAVHELDNDSYGREMEWALRGMGCNPSVPAVFIGNSRYLISIRMDKVMRLASEKGVVIFTKSSCCLCYAVNILFQELGVRPVVHEIDQDPEGREMEKALLRLGCTAPVPAVFIGGKLMGSTNEVMSLHLSGSLTQLLKPYQASLS. 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04998 160 Pfam Glutaredoxin 71 132 IPR002109 -
Seca2g04998 160 Pfam Glutaredoxin 1 50 IPR002109 -
Seca2g04998 160 SUPERFAMILY Thioredoxin-like 1 51 IPR036249 -
Seca2g04998 160 Gene3D Glutaredoxin 56 158 - -
Seca2g04998 160 FunFam Glutaredoxin family protein 59 159 - -
Seca2g04998 160 PANTHER GLUTAREDOXIN 1 50 IPR011905 -
Seca2g04998 160 NCBIfam glutaredoxin-like family 62 158 IPR011905 -
Seca2g04998 160 SUPERFAMILY Thioredoxin-like 59 155 IPR036249 -
Seca2g04998 160 CDD GRX_GRXh_1_2_like 71 151 - -
Seca2g04998 160 ProSiteProfiles Glutaredoxin domain profile. 59 159 - -
Seca2g04998 160 Gene3D Glutaredoxin 1 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04998 Seca-Chr2 136646673 136649366 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04998 1 49 Miscellaneous Gene Families AT4G15660 53.061 7.95e-15 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04998 K03676 - mtr:11433569 194.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04998 2 136646673 136649366 Seca2g04998 2 136646673 136649366 ECH
Seca2g04998 2 136646673 136649366 Seca2g05000 2 136662911 136672838 PCT
Seca2g04998 2 136646673 136649366 Seca2g04998 2 136646673 136649366 PCT