Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04897 ATGTCGGTGAAGGAGTGTGACCACCACAAGGGAAAGAAGCACAAACTCTTCAAACGCATCTTCTGGGGGATTGTGATCTTCGTGTTCATCGTTCTGGTGACGATTCTAATAATTTGGGCAATCCTTAAGCCTTCAAAACCAACCTTCATCCTCCAAGACGTCACCGTTTACGCCTTCAACGCCACAATCCCTAACTTCCTCACTTCCAACTTCCAAGTCACACTTTCCTCTCGCAATCCTAACGACAAAATCGGCATCTACTACGACCGTCTCGACACCTATATGACCTACCGGAGCCAGCAAGTCACCTTCCGCACCGCCATCCTTCCGTCGTATCAAGGCCACAAAGAGGAAGACGTTTGGTCCCCTTTCGTCTACGGCACCGATGTCCCCGTCGCTCCTTACAACTCCGTTAGCCTCAGCCAGGACCAGTCTAACGGTCACGTCCTCGTTATCGTTAAGATTGACGGCAGGGTCCGATGGAAGGTTGGTGCCTTTATCTCTGGCCATTACCATCTCTATGTCCGGTGCCCTGCTTTCATCACCTTCGGTCCACGTAGCACCGGGATTGCCATCGGTGAAAACGCCATTAAGTATCAGTTGGTCCAGCGATGCACCGTTAGCCAGCCCCCATTGAATGGTGCCTTCTACGGGCCCGCCATTCCGCCGGTGGAGCAACCCCGCTACCGCCATCATCACCGCGGCAGAAGCTGCTGCTGCTGCCTCTTTGGCGTCTTCTGGAAGCTTCTGATCGCACTCATCGTCCTCTTTGGCCTCGCAATCCTCATCTTCTATCTCATCGTTCAACCTCGCGTATTCAAGTTCTATGTCAATAAAGCAGAGCTAACCCAATTTGACTACACAGACAACACGCTCCATTACAACATGGTGTTCAACTTCACAGCACGCAACCCCAACAAAAAGCTCAGCATCTATTACGACAAAGTGGAGGCATTGGCATTCTACGAGGGGTCAAGGTTCGCCAATACTGACGTCATCACCCACATGAATTCTTTCCGTCAGTACAAGAAAAGCAGCGACCCATGA 1047 0.5138 MSVKECDHHKGKKHKLFKRIFWGIVIFVFIVLVTILIIWAILKPSKPTFILQDVTVYAFNATIPNFLTSNFQVTLSSRNPNDKIGIYYDRLDTYMTYRSQQVTFRTAILPSYQGHKEEDVWSPFVYGTDVPVAPYNSVSLSQDQSNGHVLVIVKIDGRVRWKVGAFISGHYHLYVRCPAFITFGPRSTGIAIGENAIKYQLVQRCTVSQPPLNGAFYGPAIPPVEQPRYRHHHRGRSCCCCLFGVFWKLLIALIVLFGLAILIFYLIVQPRVFKFYVNKAELTQFDYTDNTLHYNMVFNFTARNPNKKLSIYYDKVEALAFYEGSRFANTDVITHMNSFRQYKKSSDP. 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04897 348 Pfam Late embryogenesis abundant protein 74 177 IPR004864 -
Seca2g04897 348 PANTHER OS05G0367900 PROTEIN 237 346 IPR044839 GO:0098542
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04897 Seca-Chr2 135444690 135451799 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04897 222 331 EF-hand Containing Proteins AT5G21130 31.034 1.13e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04897 - - gmx:100795832 362.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04897 2 135444690 135451799 Seca2g04897 2 135444690 135451799 ECH
Seca8g05090 8 140737126 140737755 Seca2g04897 2 135444690 135451799 PCT