Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04276 ATGGCGGCTCTGTCCCATTCTGATTCTACAAGAATGTATTCATGGTGGTGGGACAGTCACATAAGCCCCAAGAACTCCAAATGGCTCCAAGAAAATCTGACAGATATGGATGTCAAGGTGAAGCAAATGATCAAGCTTATTGAAGAAGATGCAGATTCCTTTGCCAGAAGGGCAGAAATGTATTATAAGAAACGTCCAGAGCTTATGAAATTGGTTGAAGAGTTTTACCGGGCATACCGGGCATTGGCTGAGAGATATGATCATGCAACTGGAGTGATTCGCCAGGCTCATCGTACCATGGCTGAAGTATTTCCTAATCAAGTCCCTCTAGTACTTGGAGATGATTTACCTGCAGTTCCTTCCACTGAGACTGAGCCGCATACACCAGGGACACCCCGCCATTCACATGCCTTTCTTGACTCAGATGAATTGCAAAAGGATGGTTCCACTCATTTCCATGCCATCAAAAGAAATGGACCTTATACTGATGAACCTGATTCTGCTATAAGCAAAAAGGGTTTGAAACAGCTCAATGATCTCTTCATGTCAGGAGAACCAGTTAGTCCTGCAAAGTTTGCTGAAGGGCGTGCTAGAAGGGGGCTCAATTTTCTTGACACAGAAGAGATTAATGGGATAAACAATGGAAGCCATGATACTGGGGCTCAAGTGTTATCTGAGTCAGAACGGATGACCAAAGCTGAGACAGAAATTTTGGCCTTAAAGACAGCACTTGCTAAATTAGAAAGTGAAAAGGAAGCTGGCTTGCTTCAGTATCAGCAGAGTTTGGAGAGATTGTCTAATCTGGAATCAGAAATGTCCCGTGCAAGAGAGAATTCTCAAGGACTTGATGAACGAGCAAGCAAAGCTGAAGCTGAAGTTCAAACCTTGAAGGAAGCCCTTGCTAAATTACAGGCTGAAAGAGAAGATAGTCTTCTTCAGTACCAGCAGTGCTTGGAGAAAATGTGTAATCTGGAGAAAAATATTTCTTCTGCTCAAAAGGATATAGGAGAACTCAATGAACGAGCTAGTAGAGCTGAAACTGAAGCTGAATCCTTAAAGCAAGACCTTGCTAGAGTAGAAGCTCAAAAGGAAGCTGCCCTTTTTCAGTATAACCAGTCCTTGGAGACATTGTCAAAACTGGAGGAGAGATTAGTACAAGCTGAGGAGAACGCAAGGAGAGTTAATGAGCAAGCTAACATAGCTAAAACTGAAATTGAGGACATGAAGTTAGAAATTAGTAAACTTACTGAAGAGAAGGAAGATGCAGCCCTTCGTTATCAGCAATGCTTGGAGATAATTTCCAGTTTGGAACATAAACTTTCTTGTGCCCAAGAGGAGGTGCATAAGCTAAATTGCAAGATAAATGATGGAGTTGAAAAGCTACAAAGTTCTGAAAAGAAGTGTCTTCTATTGGAAACATCAAATCAGACTCTACAATCCGAATTGCAGTCTTTGGCACTGAAGATGGGGTCTCAAAGTGAAGAGCTTAGTGAGAAGCAGAAGGAATTGGGTAGACTTTGGACTTGCATACAAGAGGAGCGGTTGCGATTCATTGAGGCTGAAACTGCTTTCCAAACTCTTCAGAATTTGCATTCTCAATCTCAGGAAGAGTTTAGATCTCTTGCTGCCGAGCTTCATAATAAGGCTGAAATTCTGGAGAAGATGGAATCCCATAAGCAAGCTTTAGAGGATGAGGTAGACAAGGCCAAGGAGGAAAACAAAATTCTAAATGAGCTCAAATTATCTTCATCTTTGTCTATAAAAAATCTGCAGGATGAGATATCAAATCTGAGGGAGACAATAAAGAAACTTGAACTGGAGGTTGGATTACGAGTAGATGAAAGAAATTCTCTTCAGCAGGAAATTTACTGTCTTAAGGAGGAGATTAATGGTGTGAATAAAAGACATGAATCCATGATGGAGGAGGTCAGATCAACTGGCTTAAACCCTCAGTGTTTTGCGTTATCTGTGAAGAAATTGCAAGATGAGAACTCAAACCTGAAGGAAACATGCGAGGCTGACAAAGGTGAGAAAGCAGCTCTAAAGGAAAAACTGGAGATCATGGAGAAGCTTCTGGAGAAAAATGCTGTTCTGGAGAAATCCCTTACAGATTTGAATGCTGAGCTGGAGAGTGTCAGAGGAAAAGTAAAGGTATTGGAAGAAACTTGTGAATCTTTGCTTGGGGAGAAATCCACTCTTGCTGCTGAGAAGGCCACCTTGTTCTTCCAGTTGCAAACCACAGCTGAAAACCTGGAAAAGCTCTCAGAAAAAAACCACCTTTTAGAAAGTTCATTATTTGATGTGAATGCTGAGCTTGAAGGATTAAGGGTAAAGTCAAAGGTTTTAGAGGACTCTTGCCTGTTGCTTGACCAAGAGAAGTCTAGTCTCACCTCTGAGAAAGAAACCTTAAATTCACAATTGAGCATCACTCATCAAACACTGAAAGATCTTGAGAAACAACACAGTGAATTGGAACTAAAGCATTTGGAACTAAAAGCAGAGAGGGAGTCTGCACTTCAAAATGTGGAAGAGCTACTGGTTTCTTTATATGCTGAGAGGGAAGAGCATTCCAGAATTGTGCAACTGAATGAAGGTCACTTGGCTGAGAAGGAATTTCAAATTCATATTCTAGAAGAAGATGCATACTACCATAGAAGGGAATATGAAGAGGAACTGGACAGAGCTGTACATGCTCAAATGGAAATTTTCATCTTGCAGAAATGTATCCAGGATTTGGAGCAAAAGAACTTCTCCCTTCTAGTTGAGTGTCAGAGACTCTTGGAGGCATCCAAAATGTCTGATGGATTGATTTCTAAATTGGAGGATGACAATGTTCAAAAGCAAGTTGATGCAAATTTGTTGTCTGAGAAAATTAAAATACTAAGGATTGGACTGCTTCAGGTGTTAAAGACTCTTGACACTAACAGCAAGCATTGGTGTGGAGATATTATTGAAGAAGACCAGGAGCTTCTGAACCATATACATGTAAAACTTCAGGAGACACAGAATTCTTTGGTCACAGTTTTCAATGGAAGCCAGCAAGTGGCCATTGAGAATTCAGTTCTTGTTACATTCCTTGGGCAGTTAAAATTAAAGGCTGAAAATCTTGTAACAGAAAGAGATGCTCTTGATGAGGAGTTGAGGACCCAATCTAAGCAGTTCATGACATTGCAAGCAGAGCTCCAAAAGATGCTGGACAAGAATCAGGAATTGAAGTTGACAATAAGCAAGGGAGAAGAGAAAATGGAAGTAATGACAACTGAAATAGAAAATCTATGCAAACAGTTGTCCGAATTGGAAGAGGCTTACAGAAACATACAGGAAGAAAGTTACAAAACATTTGAAGAGAAAATTTCCTTAATGAGAAGATTTCAAGATCTGGGTGAAAAGAAAAGTAGTTTGGAAGAAGAAATCTGCATCATGATTCATGAGACAGTAGCTCAATCTAATATTTCTCTGATCTACCAGAACATTGTCTTTGAAAAACTCCTCGCACTTAAAGAGCTAAGCAAAGAGCTTGATAAACTTTTCTTGGTAAATACCGACCTTGAGGAGAGATTAAAAATAATGATGGGTAAATTAGAAGATGTGCAAATGGAAAACTCATATCTTAAGGAGTCATTTGTACTGTCAAACATTGAGCTAAAATTAGTTGAATCTGTCAATGATCAATTGAACTGCCAGATTAGGAATGGAAAGGAATTGTTGTCTCAAAAGGAAAATGAGGTTTTGGAAGCAGCAGAGATGTTTAGTGCTTTATATGATGAGAAAACAGAATTGCAAAGATTGGTGGAAGATCTGAAGAGTAAGTATGATGAAGCTAGGTTGAAACTTGAAGATCAAGCTAGTCAAATTTTAAAATTGTCCTCAGATAAGGATCGTCAAAATGAAGAGCTTGGATGCCTTTGTGAAGTGAATCAGAAGTTGGAGACTGAAATGAGACACCTGCATCAAGAACTTGAAGAAACTAAACTGAGGGAAGAGAAGCTAAATTATGAATTACTAAAGGGAACAAATGAGATTGAACAATGGGAATCTCAGGTTGCCACACTCTATACCGGACTGCAGATTTCTGCTGTCAATGAGACATTATTTGAAGGGAAGATCTGTGAGCTAGCTGATACATGTGAGGATCTTGAACGCAGAAGCAGCTCTAAATGTATGGAAGGTGAAAAGCTGAAAGAAAGAGTTAACAAGTTGGAAGGAGAAAACGGGAAACTACGCAATCAGTTGGCTTCCTTTGTCCCAGCTGTCAGTGCTTTGAATGATTGTATAACATCCTTGGAGATGCAGACACTTGTACATTCAAAACCTCACTACAAAGAATCAAAGGTTAAAAATTTGGTGAATCACAAATACAACGAAGGTGAATCACAATTTGGTGAATCACAAACAGGTGAGGATCAAAATGCTACATCAACAGATGCACTTCCAGACTTCCAAGACATGCAGAAAAGGATCAATGCAATTGAAATGGCTGTTAAACAGATGAATGAAAGTTTCAAACCTAAGGATGAAATGAGAGAGATTCAAGTGTTAAAATCTGGAAACAGCTGGCGCCACGGAAATACTCAAGCAAGTAAGCATCTTACTCAAATTGATGAAGCAAAGGAGCATCAAGGTGGACCTGCTGATGAGCACAAGAGAGGAAAATCAGTGTCAGATATTCCTGTAGCAGAAATTGAAGTTCTGCCAAAAGACATCATGCTTGATCAAACATCTGAATGTTCGTCATATGGGATAAATAGGAGAGGAACTCTTGAGTCTGATGATCAGATGCTTGAATTGTGGGAAACTGCTGATAGGGATGGCATTATTGGCCTAACAGTTGGCAAGTCACAGAAGAAGGCCACTGCATCAACTGGATACCAATACCATCAAAGGAGAGCATCCAAGGAGTCCAAAAACAAATATCCTTCAGTAGAATCCTTGATTGAAAAGGAGTTGAGTGTGGACAAATTAGAGATCTCAAGAAGACAGACTCAGCCACAACCACATGAAGAAGGCAATAAGAGGAAGATTTTAGAAAGACTTGATTCTGATGCTCAAAAGTTGACAAACCTTGAAATTACTGTACAAGATTTGATGAACAAGATGGAAATTATTGAGAAGAGCACAAAGGGAAAAGGAATTGAGTATGATACAGTGATAGGGCAGCTTGAAGCTGCTCAGGAGACCATCACAAAGTTGTTTGATGCCAACCGCAAGTTGATGAAGAGTGTAGAGGAGGGTACCTCATCCTATGCTGGGAAGTCTACAACAGAATCAGATGAGAGTGGAAGTGTCAGCAGAAGGAGAGTTTCAGAACAGGCTCGGAGAGGGTCTGAAAAAATAGGACGGCTGCAATTAGAGGTGCAAAGACTGCAATTTTTACTTCTAAAATTGAATGATGACAAAGAAGGGAAAGGAAAAGCAATGGCTGATGATCAAAATCCAAGAGTCCTTTTGCGAGATTATCTCTATGGTGGGACAAGAGGCAACTACAGAAACAACTACCAAAAGAGGAAGAAGAAGGCACCCTTTTGTGCATGCATGCAGCCTCCCACTAAGGGAGATTGA 5559 0.4012 MAALSHSDSTRMYSWWWDSHISPKNSKWLQENLTDMDVKVKQMIKLIEEDADSFARRAEMYYKKRPELMKLVEEFYRAYRALAERYDHATGVIRQAHRTMAEVFPNQVPLVLGDDLPAVPSTETEPHTPGTPRHSHAFLDSDELQKDGSTHFHAIKRNGPYTDEPDSAISKKGLKQLNDLFMSGEPVSPAKFAEGRARRGLNFLDTEEINGINNGSHDTGAQVLSESERMTKAETEILALKTALAKLESEKEAGLLQYQQSLERLSNLESEMSRARENSQGLDERASKAEAEVQTLKEALAKLQAEREDSLLQYQQCLEKMCNLEKNISSAQKDIGELNERASRAETEAESLKQDLARVEAQKEAALFQYNQSLETLSKLEERLVQAEENARRVNEQANIAKTEIEDMKLEISKLTEEKEDAALRYQQCLEIISSLEHKLSCAQEEVHKLNCKINDGVEKLQSSEKKCLLLETSNQTLQSELQSLALKMGSQSEELSEKQKELGRLWTCIQEERLRFIEAETAFQTLQNLHSQSQEEFRSLAAELHNKAEILEKMESHKQALEDEVDKAKEENKILNELKLSSSLSIKNLQDEISNLRETIKKLELEVGLRVDERNSLQQEIYCLKEEINGVNKRHESMMEEVRSTGLNPQCFALSVKKLQDENSNLKETCEADKGEKAALKEKLEIMEKLLEKNAVLEKSLTDLNAELESVRGKVKVLEETCESLLGEKSTLAAEKATLFFQLQTTAENLEKLSEKNHLLESSLFDVNAELEGLRVKSKVLEDSCLLLDQEKSSLTSEKETLNSQLSITHQTLKDLEKQHSELELKHLELKAERESALQNVEELLVSLYAEREEHSRIVQLNEGHLAEKEFQIHILEEDAYYHRREYEEELDRAVHAQMEIFILQKCIQDLEQKNFSLLVECQRLLEASKMSDGLISKLEDDNVQKQVDANLLSEKIKILRIGLLQVLKTLDTNSKHWCGDIIEEDQELLNHIHVKLQETQNSLVTVFNGSQQVAIENSVLVTFLGQLKLKAENLVTERDALDEELRTQSKQFMTLQAELQKMLDKNQELKLTISKGEEKMEVMTTEIENLCKQLSELEEAYRNIQEESYKTFEEKISLMRRFQDLGEKKSSLEEEICIMIHETVAQSNISLIYQNIVFEKLLALKELSKELDKLFLVNTDLEERLKIMMGKLEDVQMENSYLKESFVLSNIELKLVESVNDQLNCQIRNGKELLSQKENEVLEAAEMFSALYDEKTELQRLVEDLKSKYDEARLKLEDQASQILKLSSDKDRQNEELGCLCEVNQKLETEMRHLHQELEETKLREEKLNYELLKGTNEIEQWESQVATLYTGLQISAVNETLFEGKICELADTCEDLERRSSSKCMEGEKLKERVNKLEGENGKLRNQLASFVPAVSALNDCITSLEMQTLVHSKPHYKESKVKNLVNHKYNEGESQFGESQTGEDQNATSTDALPDFQDMQKRINAIEMAVKQMNESFKPKDEMREIQVLKSGNSWRHGNTQASKHLTQIDEAKEHQGGPADEHKRGKSVSDIPVAEIEVLPKDIMLDQTSECSSYGINRRGTLESDDQMLELWETADRDGIIGLTVGKSQKKATASTGYQYHQRRASKESKNKYPSVESLIEKELSVDKLEISRRQTQPQPHEEGNKRKILERLDSDAQKLTNLEITVQDLMNKMEIIEKSTKGKGIEYDTVIGQLEAAQETITKLFDANRKLMKSVEEGTSSYAGKSTTESDESGSVSRRRVSEQARRGSEKIGRLQLEVQRLQFLLLKLNDDKEGKGKAMADDQNPRVLLRDYLYGGTRGNYRNNYQKRKKKAPFCACMQPPTKGD. 1853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04276 1852 SUPERFAMILY Tropomyosin 405 644 - -
Seca2g04276 1852 Coils Coil 1166 1200 - -
Seca2g04276 1852 MobiDBLite consensus disorder prediction 1616 1641 - -
Seca2g04276 1852 Coils Coil 1222 1242 - -
Seca2g04276 1852 MobiDBLite consensus disorder prediction 1742 1776 - -
Seca2g04276 1852 Coils Coil 1678 1705 - -
Seca2g04276 1852 Coils Coil 328 425 - -
Seca2g04276 1852 MobiDBLite consensus disorder prediction 1458 1479 - -
Seca2g04276 1852 Coils Coil 1480 1500 - -
Seca2g04276 1852 Coils Coil 1026 1109 - -
Seca2g04276 1852 Coils Coil 545 579 - -
Seca2g04276 1852 Coils Coil 1250 1298 - -
Seca2g04276 1852 MobiDBLite consensus disorder prediction 1758 1776 - -
Seca2g04276 1852 Coils Coil 587 607 - -
Seca2g04276 1852 Coils Coil 800 841 - -
Seca2g04276 1852 Coils Coil 258 320 - -
Seca2g04276 1852 Coils Coil 230 250 - -
Seca2g04276 1852 PANTHER PROTEIN NETWORKED 4A 284 388 - -
Seca2g04276 1852 Coils Coil 744 764 - -
Seca2g04276 1852 Coils Coil 657 729 - -
Seca2g04276 1852 ProSiteProfiles Networked (NET) actin-binding (NAB) domain profile. 13 93 IPR011684 GO:0003779
Seca2g04276 1852 Coils Coil 433 453 - -
Seca2g04276 1852 Coils Coil 1390 1410 - -
Seca2g04276 1852 Coils Coil 1306 1333 - -
Seca2g04276 1852 Coils Coil 909 929 - -
Seca2g04276 1852 Pfam KIP1-like protein 14 87 IPR011684 GO:0003779
Seca2g04276 1852 Coils Coil 615 635 - -
Seca2g04276 1852 Gene3D - 228 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04276 Seca-Chr2 127307411 127314574 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04276 - - gmx:100810726 2772.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04276 2 127307411 127314574 Seca2g04276 2 127307411 127314574 ECH
Seca8g05754 8 149857790 149866123 Seca2g04276 2 127307411 127314574 PCT