Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04130 ATGGAAGAGTCAGAAAATAGTGGAGGGAAAGGTGCGGTGGCCAAGTGGGAAGTGAGAGAGGGAGAGAAGATTGGTGACTCAGGATTACTATTTGCAAATCACGTTAAAGTACCCAGTGGGTCCCACCTCATTGGACGGAACTCGGAAGGTGCACTTCGAGGAGTGGAAACAATTTGCTTAAATACAGCCCCACTGCGCCCTCTCAAGCCTTGCCCCCTCTCCCACTCCCTCTTCTTCACACATTCTGCGGCGCCACAACAAATCTCCTCCACAGTTCACTCCTTCAGGGCACACACATTGTTCACTTTAATTCTTGTGCGTTTAGAAACTATTACGGTAGGTTGCGTGAAGATGGGGGCTGGTGGCCGAACCTCTGTTCCTCCTCCCAACAGGAAGTCAGAGGCTGACTCTGTGAAGCGGGTGCCATTTGCAAAACCTCCGTTCAGTCTCAGCCAGGTCAAGAAGGCCATTCCACCTCACTGTTTTCAGCGCTCTGTTATCCGTTCATTCTCTTATGTCTTTTATGACCTCACCATAGCCTTCTGCCTCTATTACGTTGCCACCCATTACTTCAACCAACTTCCTCACCCTCTTTCTTTCTTGGCCTGGCCAACCTACTGGGCTATCCAAGGTTGCATCCTTACCGGCGTTTGGGTCATTGCACATGAGTGTGGCCACCATGCATTCAGTGATTATCAGTGGCTTGATGATACCGTTGGCCTTATTCTCCACTCTGCTCTACTAGTCCCTTACTTTTCATGGAAATACAGCCATCGCCGCCACCATTCCAACACGGGTTCTCTTGAGCGGGATGAAGTCTTTGTGCCCAAGCAGAAGTCTGGTATGCAGTGGTACTCAAAATACCTTAACAACCCCCTTGGCAGAGTCCTCACTCTTACTATCACCCTCACTCTTGGCTGGCCCCTGTACTTGGCTTTTAATGTTTCAGGCAGGCCTTATGATAGGTTTGCTTGCCACTATGACCCATATGGTCCCATTTACTCAGATCGTGAACGTCTTCAAATATATATATCAGATGCAGGAGTACTTGCAGTATGCTATGGGCTTTACTATCTTGTCATGGTAAAAGGGCTTGCTTGGGTTGTGTGCGTTTATGGAGTTCCACTGCTAGTGGTCAATGGATTCTTGGTCTTGATTACATACTTGCAGCATACTCACCCTGCGTTACCACACTACGATTCTTCTGAGTGGGACTGGTTGAGAGGAGCTTTAGCAACAGTGGACAGGGATTATGGAATCCTGAACAAGATCTTCCATAACATTACAGACACTCATGTGGCGCATCACTTGTTCTCCACTATGCCACATTATCATGCAATGGAGGCTACAAAGGCAATTAAACCAATTTTGGGAGAGTATTATCGGTTAGATGAGACTCCATTTTATAAGGCATTATGGAGAGAGGCAAAAGAATGTATTTATGTTGAGCCAGATCATGGTACTGCGAGCAAAGGTGTATTCTGGTACAACAAAAAGTTGTGA 1503 0.4717 MEESENSGGKGAVAKWEVREGEKIGDSGLLFANHVKVPSGSHLIGRNSEGALRGVETICLNTAPLRPLKPCPLSHSLFFTHSAAPQQISSTVHSFRAHTLFTLILVRLETITVGCVKMGAGGRTSVPPPNRKSEADSVKRVPFAKPPFSLSQVKKAIPPHCFQRSVIRSFSYVFYDLTIAFCLYYVATHYFNQLPHPLSFLAWPTYWAIQGCILTGVWVIAHECGHHAFSDYQWLDDTVGLILHSALLVPYFSWKYSHRRHHSNTGSLERDEVFVPKQKSGMQWYSKYLNNPLGRVLTLTITLTLGWPLYLAFNVSGRPYDRFACHYDPYGPIYSDRERLQIYISDAGVLAVCYGLYYLVMVKGLAWVVCVYGVPLLVVNGFLVLITYLQHTHPALPHYDSSEWDWLRGALATVDRDYGILNKIFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYRLDETPFYKALWREAKECIYVEPDHGTASKGVFWYNKKL. 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04130 500 PANTHER OMEGA-6 FATTY ACID DESATURASE, CHLOROPLASTIC 130 498 IPR012171 GO:0016491
Seca2g04130 500 CDD Delta12-FADS-like 164 446 - -
Seca2g04130 500 Pfam Domain of unknown function (DUF3474) 141 183 IPR021863 GO:0016717
Seca2g04130 500 Pfam Fatty acid desaturase 202 462 IPR005804 GO:0006629
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04130 Seca-Chr2 124674343 124680079 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04130 118 500 Lipid Metabolism Gene Families AT3G12120 77.285 0.0 644
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04130 K10256 - gmx:100805040 740.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04130 2 124674343 124680079 Seca2g04130 2 124674343 124680079 ECH
Seca8g04950 8 137027057 137030974 Seca2g04130 2 124674343 124680079 PCT