Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03503 ATGGGTGCTAGTCGAAAGCTTCAGGGAGAGATCGATCGCGTTCTCAAAAAGGTTCAGGAAGGCGTTGAAGTCTTCGATAGTATTTGGAACAAGGTTTACGACACGGACAATGCAAACCAGAAGGAGAAATTTGAGGCAGACCTCAAGAAGGAAATTAAGAAGCTCCAGAGGTACAGAGACCAAATTAAGACATGGATTCAGTCCAGTGAGATCAAGGACAAGAAGGTTAGTGCCTCGTATGAACAGGCTCTGGTGGATGCACGCAAGCTAATTGAGCGAGAAATGGAAAGATTTAAGATCTGTGAGAAGGAAACTAAGACCAAAGCATTCTCCAAAGAAGGCTTGGGTCAGCAGCCTAAGACTGATCCAAAAGAGAAAGCTAAATCAGAGACAAGGGATTGGTTAAACAATGTGGTTGGAGAGTTAGAATCTCAGATTGATAACTTTGAAGCTGAGCTCGAAGGGCTTTCTGTCAAGAAAGGAAAGAACAGACCACCAAGATTGACGCATCTTGAGACATCAATTACTAGGCACAAGGCTCATATAAAAAAATGTGAATTCATTTTGAGGCTGCTAGATAACGATGAATTAAGTCCTGAGCAGGTTAATGATGTTAAAGATTTCTTGGATGACTATGTAGAGCGTAATCAGGAGGATTTTGAGGAGTTCAGTGATGTTGATGAACTATACAGTTCATTACCTTTAGACAAGGTGGAGACTCTAGAAGATCTTGTGACAATTCCCTCTGGTCTTTCTAAGGTGGCACCTAGTCTTAGCTTGAAGAATCCATTGGCAGCATCAGCATCACAATCAGCGTCAGCATCTGCATCACAAACATCTGAAACTGTGATTTCTAATCATCAGGATGCTTCTGTCCAGGAGCAAGCTGACGACACAGCATCCCAGGATAGCAATTCTGACATTGTTGCAAAAACTCCACCTCCTAAAAGTGGTGGAATTAGTTCTGCCACTTCAACACCTGCTGGGAACCATGCTACCCCTGTTGCCGTAAATGTTTCAGGTCATAACTTGTCCAGTGCACCAGCTGTTGCAGTCCTGCCTGGTTCAAATTCTGTTCGGAATGTCTTGGAGAATGCTAACGTTGCCAATTCTTCTTCAGTTAATCAGTCTACTTCTACAAAAGAAGAAGAGATTAATAGCTTCCCTACCCGGAGACCATCTCCATCACTTTCTGATGCAGCACTTGTTAGGGGCAGAAACAGCCTGTCAAATCAAGCAACAGCTAGCATGCCTCTTAGCCCTGTAAACATGGTTTCCAGCAATGGGGCCCTTGGTGCAGTCCCTTCAGCCTCAGAAATAACTAAGAGAAACATTCTGGGAGCTGATGATAGACTTGGAAGTAGTGGAATGGTGCAGCCTCTTATATCCCCACTAAGCAATAGATTGATCTTGCCTCAGGTTGCGAAGGCTAATGATGGAACTGCTTCACTTGACTCTAATACTATGAATGAAGCTGCAGCTGTATCTGGGAGAGTTTTTTCCCCTTCTGTGGTTCCTGGCATGCAATGGAGACCTGGAAGTCCCTTTCAGAATCAGAATGATGCAGGGCAGATTCGTGGAAGAACTGAGATAGCTCCTGATCAAAGGGAAAAATTTTTGCAGAAGTTTCAGCAAGTACAGCAACAAGGGGCCAGTACCCTTCTTAATATGCCTTCTATTGTTGGAGGAAATCATAAGCAGTTTTCTGCCCAGCAGCAAAATCCCCTGTTACAGCAGTTTAACTCTCAAGGCTCATCTGTTTCTTCTCAATCTGGCATGGGACTTGGAGTCCAGTCCCCGAGTCTCGGTGGCATTTCTTCTGCTTCAATACAGCAGCCACCTAATTCTGTCCATTCCCCATCTAGTCAACAGCCATTGATTCCAGGTGTTTCTAAGGACGCAGATGTTGGCAATTCTAAGATTGAAGAACAGCAGCAACATCAGAATTTTCCTGATGAGTCAACAACTGAATCTACTGCAAGCACTGGGATTGGCAAGAATCTCATAATTGAAGATGACTTGAAATCAGCATATGCTGTAGATTCAGCTGCAGGAGTATCTGCCTCTCTTCCAGAATCTGCCCAAACATCCAGGGATATTGATCTGTCTCCTGGCCAACCTTTACAATCCAATCAATCTACTGGTAACCTTGGTGTCATTGGAAGAAGAAATGGTGCTGAACTTGGAGCCATTGGTGATAATTTTAGTGGATCTAGTGTTAGTTCTGGTGGAGTGCGCGATCAACTATATAATTTACAAATGCTTGAGGCAGCACACTACAGAATTCCCCTAGCTAAAGACTCAGAACGCCCTAGGACTTATACTCCTAGGCACCCAGCAATTACACCTCCTAGCTATCCTCAAGTACAGGCCCCTATAGTTAATAATCCTGCCTTTTGGGAGAGAGTAGGTCTTGAACCATTTGGCACTGACACACTGTTCTTTGCATTTTATTATCAACAGAATACTTACCAACAATATTTGGCTGCAAAGGAGCTAAAGAAGCAGTCTTGGAGATACCACAGAAAGTACAATACATGGTTTCAGCGACATGAAGAGCCCAAAGTTGCTACTGATGAATATGAGCAGGGAACGTATGTATACTTTGATTTCCATATTGCAAATGATGACCTGCAACACGGATGGTGTCAGAGAATCAAGACCGAATTCACTTTTGAATATAATTATCTTGAAGATGAGCTTCTTGTATAG 2712 0.4336 MGASRKLQGEIDRVLKKVQEGVEVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNVVGELESQIDNFEAELEGLSVKKGKNRPPRLTHLETSITRHKAHIKKCEFILRLLDNDELSPEQVNDVKDFLDDYVERNQEDFEEFSDVDELYSSLPLDKVETLEDLVTIPSGLSKVAPSLSLKNPLAASASQSASASASQTSETVISNHQDASVQEQADDTASQDSNSDIVAKTPPPKSGGISSATSTPAGNHATPVAVNVSGHNLSSAPAVAVLPGSNSVRNVLENANVANSSSVNQSTSTKEEEINSFPTRRPSPSLSDAALVRGRNSLSNQATASMPLSPVNMVSSNGALGAVPSASEITKRNILGADDRLGSSGMVQPLISPLSNRLILPQVAKANDGTASLDSNTMNEAAAVSGRVFSPSVVPGMQWRPGSPFQNQNDAGQIRGRTEIAPDQREKFLQKFQQVQQQGASTLLNMPSIVGGNHKQFSAQQQNPLLQQFNSQGSSVSSQSGMGLGVQSPSLGGISSASIQQPPNSVHSPSSQQPLIPGVSKDADVGNSKIEEQQQHQNFPDESTTESTASTGIGKNLIIEDDLKSAYAVDSAAGVSASLPESAQTSRDIDLSPGQPLQSNQSTGNLGVIGRRNGAELGAIGDNFSGSSVSSGGVRDQLYNLQMLEAAHYRIPLAKDSERPRTYTPRHPAITPPSYPQVQAPIVNNPAFWERVGLEPFGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVATDEYEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELLV. 904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03503 903 MobiDBLite consensus disorder prediction 370 398 - -
Seca2g03503 903 MobiDBLite consensus disorder prediction 690 717 - -
Seca2g03503 903 Pfam Not1 N-terminal domain, CCR4-Not complex component 4 236 IPR007207 GO:0005634|GO:0006355
Seca2g03503 903 PIRSF NOT_su_3_5 1 903 IPR012270 GO:0006355|GO:0030015
Seca2g03503 903 MobiDBLite consensus disorder prediction 580 628 - -
Seca2g03503 903 Coils Coil 41 61 - -
Seca2g03503 903 Coils Coil 132 159 - -
Seca2g03503 903 MobiDBLite consensus disorder prediction 110 131 - -
Seca2g03503 903 Pfam NOT2 / NOT3 / NOT5 family 760 897 IPR007282 GO:0006355
Seca2g03503 903 FunFam CCR4-NOT transcription complex subunit 3 isoform X1 743 898 - -
Seca2g03503 903 PANTHER CCR4 NOT-RELATED 24 900 IPR040168 GO:0030015
Seca2g03503 903 MobiDBLite consensus disorder prediction 641 664 - -
Seca2g03503 903 MobiDBLite consensus disorder prediction 370 394 - -
Seca2g03503 903 MobiDBLite consensus disorder prediction 277 336 - -
Seca2g03503 903 MobiDBLite consensus disorder prediction 580 664 - -
Seca2g03503 903 Gene3D - 743 898 IPR038635 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g03503 Seca-Chr2 108770017 108779893 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g03503 K12580 - gmx:100785965 1527.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g05093 10 116662696 116687362 Seca2g03503 2 108770017 108779893 PCT