Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05093 ATGGGAGCGAGTCGAAAGCTTCAGGGAGAGATCGATCGTGTTCTCAAGAAGGTCCAAGAAGGCGTCGAAGTCTTCGATAGCATCTGGATGAAGGTTTACGAGACGGACAATGCGAACCAGAAAGAGAAATTCGAGGCTGACCTGAAGAAGGAGATTAAGAAGCTGCAGAGGTATAGAGATCAGATTAAGACTTGGATTCAGTCCAGTGAAATCAAGGATAAGAAGGTTAGTGCCTCGTATGAGCAGGCTCTGGTGGATGCACGCAAGCTTATTGAGCGTGAAATGGAAAGATTCAAGATATGTGAAAAGGAGACGAAGACAAAAGCATTCTCCAAAGAAGGCTTGGTTCAACAGCCTAAAACTGATCCTAGAGAGAAGGCTAAATCAGAGACAAGGGATTGGTTGAACAATGTGGTTGGGGAGTTAGAATCTCAGATCGATAACTTTGAAGCTGAGCTTGAAGGATTTTCCATTAAGAAAGGAAAGAGCAGGCCACCCAGATTGACACATCTAGAGACATCAATTACTCGACACAAGGCTCATATAAAGAAATGTGAATTGATCTTGAGATTACTAGATAATGATGAATTAAGTCCTGAGCAGGTTAATGATGTAAAAGATTTCCTGGATGACTATGTGGAACGTAATCAGGAGGACTTTGAAGATTTCAGTGATGTTGATGAGCTATACAGTTCATTACCTTTAGACAAGGTGGAATCACTTGAAGATCTAGTTACAATTCCCCCTGGTCTTGCTAAGGTAATGAATATTATTGCTAGTTCCCTTTCCAGGCAAACTCCGACTTCTAATCAAGATGCTTTTGTCCAGGAACAAGCTGATGATTCACCTTCCCAGGATAGCAATTCTGACAATGGTGCAAGAACGCCACCTCCTAAAAGTAGTGTAGTTAGTTCGACTACTTCAGCACCAGCTGGGAATCTTGCTACACCTGCTTCTATGAATGTTGTAGTGCTAAACTTGTCCAGTGCACCAGCTGTTGCATCAGTCATGCCTGGTTCAAATTCTATTCAGAGTTCCTTGGAGATTACTAGTGCTGTCAACCCTTTATCTTCTGTAAATCAGTCTACCACTACGAAGGAGGAAGAGATAAATAGCTTCCCTGGCCAGAGACCATCTCCATCGCCTTCTGATGCTGCGCCTGCAAGGAGCATCAGCAGAAACAGCCTGCCAAATCAAGCAACAATTAACATCACTCCTGTTTCTGGAAACATGGTTTCCAGCAACGGGGCCCTTGGTTCAGTCCCTTCAGCCTTTGAATTAACTAAGAGAAACATATTGGTAGCTGATGATAGACTTGGAAGCAATGGGATGGTGCAATCTCTTGTATCCCCCCTTAGTAATAGAATGATCATGCCTCAGGTTGCAAAGGCTAATGTTGGAACTGCCTCAGTTGACTCTAGTAATGTTAATGAAGCTGCAGCTGTGTCTGGGAGAGTTTTCTCCCCTTCAGTGGTTCCTGGAATGCAATGGGGACCTGGAAGCCCCTTCCAGAATCAGAATGAAGTGGGCCAGCTTTGTGGAAGAACTGAAATAGCACCTGATCAAAAGGAAAAATATTTGCAGAACTTGCAGCAAATGCAGAAACATGGGCAAAATGCCCTTCTTAATATCAATATGTCTTCTCTTGGTGGAGGAAATCATAAGCAGTATTCTGCTCAGCAACAATATCCTCTCTTGCAGCAGTTCAATTCTCAAGGCTCATCTGTTTCTTCTCAATCTGGTTTGGGACTTGGAGTCCAGTCACCTGGTCTTAGTGGTATTTCTTCTACCGCATCATTACCACAGCCACCCAATTCTTTCCATTCCCCATCTAGCCAACAGCCGTTGATGTCGATTGTTTCTAAAGATGCAGATGTTGGCAATGCTAAGGATGAAGATCCACAGCAACAGCAGACTTTTCCTGATGATTCTGGGACTGCATCTACTGCTAGTACTGGGATTGGCAAGAATTTTGTGAATGATGATGAATTAAAATCCACATATGCTGTAGATTCTCCTGCAGGAGTATCTGCTTTTCTTCCACAGCCTGCTCAGACTTCTAGAGATATTGATTTATGTCCTGGCCAGCTTTTACAATCCAATCAACGTACTGGTAACCTTGGTGTTATCGGTAGAAGTTTTGCTGACCTTGGATTTGGGGCCATTGGTGACAACCTTAGTGGATCAATTGCTAATCTTGGTAGAGTGCATGATCAATTATATAATTTGCAGATGCTTGAGGCAGGGAGCCACAAACTTCCACAATCTAAGGACTCAGAACGTCCTAGGACCTATATTCCTAGGCATCCAACAATAACACCTCCTAGTTATCCTCAAGTACAGGCACCTTTTGTTACTGATCGTGCATTTTGGGAAAAAGTAGGTCTCAAACCATTTGGCACTGATACCCTGTTCTTTGCATTTTATTATCAACAGAACACTTGTCATCAATATTTGGCTGCTAAAGAGCTAAAGAAGCAGTCTTGGAGATATCACCAAAAGTATAACACATGGTTTCAACGTCATGAAGATCCAAAAGTTGCAACAGATGAATATGAGCAGGGAGCATATGTGTACTTCGATTTCCATATTGCAAATGATGATATGCAACATGGGTGGTGTCAAAGAATCAAGACTGAATTCACTTTTGAATATGATTATCTTGAAGATGAGCTTCTTATCTAG 2685 0.425 MGASRKLQGEIDRVLKKVQEGVEVFDSIWMKVYETDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLVQQPKTDPREKAKSETRDWLNNVVGELESQIDNFEAELEGFSIKKGKSRPPRLTHLETSITRHKAHIKKCELILRLLDNDELSPEQVNDVKDFLDDYVERNQEDFEDFSDVDELYSSLPLDKVESLEDLVTIPPGLAKVMNIIASSLSRQTPTSNQDAFVQEQADDSPSQDSNSDNGARTPPPKSSVVSSTTSAPAGNLATPASMNVVVLNLSSAPAVASVMPGSNSIQSSLEITSAVNPLSSVNQSTTTKEEEINSFPGQRPSPSPSDAAPARSISRNSLPNQATINITPVSGNMVSSNGALGSVPSAFELTKRNILVADDRLGSNGMVQSLVSPLSNRMIMPQVAKANVGTASVDSSNVNEAAAVSGRVFSPSVVPGMQWGPGSPFQNQNEVGQLCGRTEIAPDQKEKYLQNLQQMQKHGQNALLNINMSSLGGGNHKQYSAQQQYPLLQQFNSQGSSVSSQSGLGLGVQSPGLSGISSTASLPQPPNSFHSPSSQQPLMSIVSKDADVGNAKDEDPQQQQTFPDDSGTASTASTGIGKNFVNDDELKSTYAVDSPAGVSAFLPQPAQTSRDIDLCPGQLLQSNQRTGNLGVIGRSFADLGFGAIGDNLSGSIANLGRVHDQLYNLQMLEAGSHKLPQSKDSERPRTYIPRHPTITPPSYPQVQAPFVTDRAFWEKVGLKPFGTDTLFFAFYYQQNTCHQYLAAKELKKQSWRYHQKYNTWFQRHEDPKVATDEYEQGAYVYFDFHIANDDMQHGWCQRIKTEFTFEYDYLEDELLI. 895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05093 894 MobiDBLite consensus disorder prediction 626 658 - -
Seca10g05093 894 Coils Coil 41 61 - -
Seca10g05093 894 Coils Coil 132 159 - -
Seca10g05093 894 Pfam NOT2 / NOT3 / NOT5 family 752 888 IPR007282 GO:0006355
Seca10g05093 894 MobiDBLite consensus disorder prediction 355 400 - -
Seca10g05093 894 Pfam Not1 N-terminal domain, CCR4-Not complex component 4 236 IPR007207 GO:0005634|GO:0006355
Seca10g05093 894 Gene3D - 731 889 IPR038635 -
Seca10g05093 894 MobiDBLite consensus disorder prediction 265 314 - -
Seca10g05093 894 MobiDBLite consensus disorder prediction 570 614 - -
Seca10g05093 894 PANTHER CCR4 NOT-RELATED 24 891 IPR040168 GO:0030015
Seca10g05093 894 MobiDBLite consensus disorder prediction 631 656 - -
Seca10g05093 894 FunFam CCR4-NOT transcription complex subunit 3 isoform X1 734 889 - -
Seca10g05093 894 PIRSF NOT_su_3_5 1 894 IPR012270 GO:0006355|GO:0030015
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05093 Seca-Chr10 116662696 116687362 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g05093 K12580 - gmx:100780204 1373.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g05093 10 116662696 116687362 Seca10g05093 10 116662696 116687362 ECH
Seca10g05093 10 116662696 116687362 Seca2g03503 2 108770017 108779893 PCT