Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06955 ATGTTGCCTCCTAAGCCACCTAGAGCCTCTGCTCACAACGGGAAGGAGGTGTCGCCGACAACTAGAAAACCTATTACTCGCAGTGCGCCAACTCGTGGGGACTCTGATGATGGCAAGTTAAAGCCAAAGCTCGTGTTGAATCCAAACAAGAAGCACAAGCCAGAATCCTATGAAGACTTGGAACTTGATTTTTGTCCTTTGGTTTTTAGCTCATTGGAGAGGCACCTGCCGCAGAAAATGCTTAGCGCACCTCGCGAGGATAAGTTGAAGTACATGTGTGAGATTTTGGTCAGTTATATGCCACCAGGATCACAAAACAGAGATCAAAAGCAAAGAGAATATAAAGAAAGGATAATATCACTTTACAAGCCTCTGCATCGAGAGTTATACACTATTGATCCTACAACATTCTTTGTCCCAACATTTCTGAAAGCAATTAATGATAATACTGAAGAAAGCTTCAAAAGTATAGTGTCCCAACCCATCCCAGGCATTTTTACATTCGAAATGCTTCAGCCACGCTTTTGCGAGTTATTATTATCTGAGGTTGAAAATTTTGAGATGTGGGTTAAGAAAGCAAATTTTCGAATTATGCGTCCCAATATACTGAATAAATATGGTGTTGTACTTGATGACTTTGGCTTTCAACCCATGCTTGACAAGCTTATGGAAGATTTCATTTGTCCTTTGTCAAAAGTGTTCTTTGCAGAAGTTGGTGGATCAACCCTGGATTCTCATCACGGGTTTATTGTCGAATACGGTGCATATAGAGATGTTGAATTGGGTCTCCATGTGGATGACTCGGAAGTTACCTTGAATGTTTGCCTTGGTCAGAAATTTTCTGGAGGGGAATTGTTTTTTCGGGGCATGCGATGTGATAAGCATTTAAATACAAGAATCCATCCAGAGGAGACCTTTGATTATTCCCATGTCCCTGGACGAGCTGTGCTTCATCATGGACGTTATCGACATGGTGCCAGAGCCACAACAGCAGGTCACCGGGCCAACCTACTTCTGTGGTGCAGAAGTTCTATTTTTAGAGAGATGAAAAAGTATAAAGAAGATTTCTCTAGCTGGTGTGTTGAGTGCAAGCAGGTGAAGCAACAAAGAAAACCCAACCTTTTATTGTCAAGGGAGCCTACTAGAGCGGTGGTACCATCCAAGAGGGGAGGCAAAATAGATGCATAA 1188 0.4234 MLPPKPPRASAHNGKEVSPTTRKPITRSAPTRGDSDDGKLKPKLVLNPNKKHKPESYEDLELDFCPLVFSSLERHLPQKMLSAPREDKLKYMCEILVSYMPPGSQNRDQKQREYKERIISLYKPLHRELYTIDPTTFFVPTFLKAINDNTEESFKSIVSQPIPGIFTFEMLQPRFCELLLSEVENFEMWVKKANFRIMRPNILNKYGVVLDDFGFQPMLDKLMEDFICPLSKVFFAEVGGSTLDSHHGFIVEYGAYRDVELGLHVDDSEVTLNVCLGQKFSGGELFFRGMRCDKHLNTRIHPEETFDYSHVPGRAVLHHGRYRHGARATTAGHRANLLLWCRSSIFREMKKYKEDFSSWCVECKQVKQQRKPNLLLSREPTRAVVPSKRGGKIDA. 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06955 395 MobiDBLite consensus disorder prediction 1 53 - -
Seca12g06955 395 PANTHER 2-OXOGLUTARATE AND IRON-DEPENDENT OXYGENASE DOMAIN-CONTAINING PROTEIN 2 26 370 - -
Seca12g06955 395 SMART p4hc 163 342 IPR006620 GO:0005506|GO:0016705|GO:0031418
Seca12g06955 395 Gene3D q2cbj1_9rhob like domain 165 343 - -
Seca12g06955 395 MobiDBLite consensus disorder prediction 14 28 - -
Seca12g06955 395 MobiDBLite consensus disorder prediction 29 53 - -
Seca12g06955 395 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 244 343 IPR005123 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06955 Seca-Chr12 161519592 161525940 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06955 - - qsu:111987273 525.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g04825 10 111078051 111082652 Seca12g06955 12 161519592 161525940 ECH
Seca12g06955 12 161519592 161525940 Seca12g06955 12 161519592 161525940 ECH
Seca12g06955 12 161519592 161525940 Seca10g04825 10 111078051 111082652 PCT