Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06602 ATGTCAGTTGCTGATTTTGCTTTGAGTTCGATTTGCAATGAGAGGGTATATTGGGAAGGCCAACCAGGACATTGCTCTGGTGAGCCAATCCTGATTTACCTTACTGTGAATGGTGCTGTGACCCCAATGCGTGTGTTGGAGTCTGATTCCATTGCTTCCGTGAAACTGAGGATTCAGCAATGCAAAGGTTTTGTGGTGAAGAAACAGAAGCTTGTTTTTGGTGGCAGAGAGCTGGCTCGTAATGATACACTCATCACGGAGTATGGTGTCACTGATGGCAATGTTCTTCATTTGGTTCTGCGCCTCTCTGATCTTCTCTTCATTGTTGTGAGGACTGTTTCTGGGAAGGAGTTTGAGTTTCACATTGATCGGCATAGAAATGTGGGGTATCTTAAGCAACGAATTAGAAAAAAAGGGGAAGGTTTCATTGATCTTGATGAGGATCAAGAGCTTTTCTGCAATGATGAGAAGCTTGATGACCGAAGGCTCTTCCATGACATATGCAAAGGTGATGATGATGTGGTTCATTTGATTATTAAGAAATCAGCTAAGGTTAGGACTACACCTATTCACAAAGATTTGAAGCTTTCTGTTGAGGCACCTATACCATTGGAGAGCAAAGATCAAAGAGTACACGTAGGAGAGAATAGGACCAAACAAATTCAGCTAGCAAAGGTACCATCTGGTATAGGTTTCTGGTTGGAACCAATTATTGTGGATCCTAAGATCAATTTTTTTCCTTTCCTTTGGGACTTGATCAACTCCACATATGAAGGTTTAAAGAAAGGAAATCGCCCCATTAGGTCCTCAGAAGGCACAGGAGGGACTTACTTCATGCAAGATACAACAGGTCAAGAGCATGTTTCAGTTTTCAAGCCCATGGATGAGGAACCAATGGCTGTGAACAATCCAAGAGGCCTACCAAGTTCATCTGATGGTGAAGGTTTAAAAAGAGGGACAAGGGTAGGAGAAGGAGCTTTGAGGGAAGTTGCAGCTTATGTATTAGATCATCCAAGGAATGGACCGCGTTTGGTGTCAGGTGAAGAAATAGGCTTCTCTGGTGTTCCCCCTACTGTTATGGTGCAGTGCTTACACCAAGAATTTCACCACCCAAATGGGTATGCTTTCTCATCAAAACATGTCAAGATAGGGTCATTGCAGAAGTTCATGAATAATGATGGTAACTGTGAGGACATTGGACCCGGGGCTTTTCCAGTGGAGGAGGTGCATAAGATTACTGTGCTTGATATAAGAATGGCGAATGCAGACAGACATGCTGGGAATATATTGATCAGAAAGGAGGCAGGTGGCCAGATTAAGCTCATTCCTATTGATCATGGCTATTGTCTACCAGATAAATTTGAAGATTGCACATTTGATTGGCTTTATTGGCCACAAGCACATCAGCCATACTCTGCTGAGACAGTTGAATATATCAATTCTCTTGATGCAGAAAAAGACATAGAACTTTTGAAATACTATGGATGGGATATTCCACTTGAGTGTGCACGAACACTTTACATTTCCACAATGTTGCTGAAGAAAGGGGTGGCAAGAGGTCTTACTCCCTATGCAATTGGAAGCATAATGTGTCGGGAAAATTTGAACAAGGAATCTGTAATTGAGGAGATTATTAGTGAAGCTCAAGATTCCTTGCTTCCTGGCATGGAGGAGGAATCGACATTTCTTGAATCCATCTCCCGAATCATGGATTCCCACCTTGATAAGCTTGCAAAATAA 1740 0.4236 MSVADFALSSICNERVYWEGQPGHCSGEPILIYLTVNGAVTPMRVLESDSIASVKLRIQQCKGFVVKKQKLVFGGRELARNDTLITEYGVTDGNVLHLVLRLSDLLFIVVRTVSGKEFEFHIDRHRNVGYLKQRIRKKGEGFIDLDEDQELFCNDEKLDDRRLFHDICKGDDDVVHLIIKKSAKVRTTPIHKDLKLSVEAPIPLESKDQRVHVGENRTKQIQLAKVPSGIGFWLEPIIVDPKINFFPFLWDLINSTYEGLKKGNRPIRSSEGTGGTYFMQDTTGQEHVSVFKPMDEEPMAVNNPRGLPSSSDGEGLKRGTRVGEGALREVAAYVLDHPRNGPRLVSGEEIGFSGVPPTVMVQCLHQEFHHPNGYAFSSKHVKIGSLQKFMNNDGNCEDIGPGAFPVEEVHKITVLDIRMANADRHAGNILIRKEAGGQIKLIPIDHGYCLPDKFEDCTFDWLYWPQAHQPYSAETVEYINSLDAEKDIELLKYYGWDIPLECARTLYISTMLLKKGVARGLTPYAIGSIMCRENLNKESVIEEIISEAQDSLLPGMEEESTFLESISRIMDSHLDKLAK. 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06602 579 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 40 555 IPR044571 -
Seca12g06602 579 MobiDBLite consensus disorder prediction 297 317 - -
Seca12g06602 579 ProSiteProfiles Ubiquitin domain profile. 106 184 IPR000626 GO:0005515
Seca12g06602 579 FunFam Phosphatidylinositol 4-kinase gamma 4 27 106 - -
Seca12g06602 579 SUPERFAMILY Protein kinase-like (PK-like) 419 576 IPR011009 -
Seca12g06602 579 ProSiteProfiles Ubiquitin domain profile. 32 101 IPR000626 GO:0005515
Seca12g06602 579 SUPERFAMILY Ubiquitin-like 34 103 IPR029071 -
Seca12g06602 579 Pfam Ubiquitin family 37 102 IPR000626 GO:0005515
Seca12g06602 579 Pfam Phosphatidylinositol 3- and 4-kinase 272 525 IPR000403 -
Seca12g06602 579 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 263 560 IPR000403 -
Seca12g06602 579 Gene3D - 26 104 - -
Seca12g06602 579 SMART ubq_7 106 180 IPR000626 GO:0005515
Seca12g06602 579 SMART ubq_7 30 101 IPR000626 GO:0005515
Seca12g06602 579 CDD Ubl_ubiquitin_like 108 178 - -
Seca12g06602 579 Gene3D - 107 195 - -
Seca12g06602 579 SUPERFAMILY Ubiquitin-like 102 181 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06602 Seca-Chr12 158110366 158113358 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06602 1 578 Acyl Lipid Metabolism Gene Families AT5G24240 58.076 0.0 682
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06602 - - gmx:100809172 999.964
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g00386 2 5313818 5317941 Seca12g06602 12 158110366 158113358 PCT