Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06384 ATGGTATCCGAATCGGAACCAACCAAACAATGGAAGCGAATGGAGGAACACGAACAAAACGGCGTGCGTAGCAGTGATAGTGAGGAACATGAGATCGAGGAAGCATTAGTGGCTCTCGTCGACCACTGCAAGCGTGAAGTCAAAAATCTCCACCACTACATCTCCTATTACACATCACAGCTTGAGGAAGCGGAAAAGAAGTTGCGAGATTCTCAATCCAAATTGGCTCGCTTTCGAGCGAAAGCCAATGCTAGTTTATTAGATGTTGAAACTAAAACAATAAAGACAGAGCATGAATCAAACGGTAGTACCATTCATAAAAATGAAGGTTCTGCTAAGAACCACCATACTATTCCTGCTGCGAGTCCAAAAACATCGCAATCCATACATTTGCCTGGTTCTCGTTCTTCTGCAAAAGCTTCAGTAACTCCCGGTTCTCAAGCCAAACCACCAGCCTTTTCTGCTCATTCAATTGCTGGTTCTACAGTAAAATATGATAAGTCTCAGAGACTTTCTACTGAGCATGATGATACTGAAATCAAGGGCAAAGGGGCAAAAAGGAAGGCTGAACAGAAAGAACACAAGGAATTGGTTCCTTTAATATGCAAAAACTCATCAGCTGTTTCAGAAGTGAACTATCAAACAAGCTACCATATCCCGAGTCAACACAAAAGGAAATTGCGAAGTATTGCTCTGTGTCCTGTGAATGATCAGCTTTTTGCGACCAGTGGTGCACCAGTCAATTTCTTAGAGGAGAAGCCTCATGTTAAGGGTGTCATCAATAACATTGTTTTCCTGCCCTGGGATAATACCCGTTTTGTAACCGGGGGAACAGACCATGCTGTTGTACTATGGAGTGAGAATGGTGAGAACAAATGGAAGCCAGAGCTATTGCATAGGGATCTTCATTCTTCTGCGGTCATGGGAGTTGCTGGTATGCAGCAGAAGCAAATTGTGTTGTCTGCTGGTAAAGACAAGAGAATTTTGGGGTATAACGCCCATCTAGGAAAACACGATTTCATGCATCAGGTTGATAGTAAATGCTTGAGTGTCCTTCCAAATCCATGCGACTTCAATTTATTCATGGTTCAAACAAGCACTCTTAAGAAGCAACTTCGATTATTTGATATTAGATTGAAGCAGAAAGAACTTCATGCTTTTGGATGGGAGCAAGAAAGAAGTGAATCTCAGTCAGCTCTGGTAAATCAGGCTTGGTCTCCCAATGGGCTGTATATAACATCTGGTTCAGCTGATCCTGTGATTCACATATTTGATATTAGATATAATGGTCAAAACCCATCCCAATCCATAAACGCTCATCGGAAACGAGTCTTCAGAGCCATGTGGCTTCAGTCTATTCCAGTTCTCATTTCCATATCATCTGATCTCAACATTGGATTACACAAGGTTGTGTAG 1416 0.4216 MVSESEPTKQWKRMEEHEQNGVRSSDSEEHEIEEALVALVDHCKREVKNLHHYISYYTSQLEEAEKKLRDSQSKLARFRAKANASLLDVETKTIKTEHESNGSTIHKNEGSAKNHHTIPAASPKTSQSIHLPGSRSSAKASVTPGSQAKPPAFSAHSIAGSTVKYDKSQRLSTEHDDTEIKGKGAKRKAEQKEHKELVPLICKNSSAVSEVNYQTSYHIPSQHKRKLRSIALCPVNDQLFATSGAPVNFLEEKPHVKGVINNIVFLPWDNTRFVTGGTDHAVVLWSENGENKWKPELLHRDLHSSAVMGVAGMQQKQIVLSAGKDKRILGYNAHLGKHDFMHQVDSKCLSVLPNPCDFNLFMVQTSTLKKQLRLFDIRLKQKELHAFGWEQERSESQSALVNQAWSPNGLYITSGSADPVIHIFDIRYNGQNPSQSINAHRKRVFRAMWLQSIPVLISISSDLNIGLHKVV. 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06384 471 Gene3D - 204 349 IPR015943 GO:0005515
Seca12g06384 471 MobiDBLite consensus disorder prediction 91 192 - -
Seca12g06384 471 Gene3D - 350 471 IPR015943 GO:0005515
Seca12g06384 471 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 247 470 - -
Seca12g06384 471 MobiDBLite consensus disorder prediction 91 113 - -
Seca12g06384 471 Coils Coil 54 81 - -
Seca12g06384 471 MobiDBLite consensus disorder prediction 8 30 - -
Seca12g06384 471 Pfam WD domain, G-beta repeat 402 425 IPR001680 GO:0005515
Seca12g06384 471 SMART WD40_4 243 286 IPR001680 GO:0005515
Seca12g06384 471 SMART WD40_4 294 332 IPR001680 GO:0005515
Seca12g06384 471 SMART WD40_4 388 425 IPR001680 GO:0005515
Seca12g06384 471 SMART WD40_4 430 469 IPR001680 GO:0005515
Seca12g06384 471 MobiDBLite consensus disorder prediction 118 150 - -
Seca12g06384 471 MobiDBLite consensus disorder prediction 168 192 - -
Seca12g06384 471 MobiDBLite consensus disorder prediction 1 30 - -
Seca12g06384 471 SUPERFAMILY WD40 repeat-like 218 463 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06384 Seca-Chr12 155834468 155838769 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06384 - - gmx:100799587 509.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06384 12 155834468 155838769 Seca4g01797 4 29638925 29639937 PCT