Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca12g06377 | ATGCCACGCTTTCCACGTAAGCTTGGGACACATTTGCATATTGACCCCTTGTTTCTTTCCACACAACCCTTCTCTTATCTTCTTCTTGTCTCTCTTTCTCTGTGTTGCAGCAGAGGAAGAGTAAAGACTAAAGAAGAAATGGCCTTACAGATGCAAGCAGCCACAACAACCAACCTTCACACTCACACGGCTCTCACTGTGAACGATGGCCTGCGACGACCCTTAAACCTTTTGGCTCTAAAGTCATCGTTTTTCAGTGGTTCACTCAACCTATATCTTCATCCTAATCAACGTCATCTTACTTCAGGAGCACCCAGGATTTCCATGCGCGTGGCTTCCAAGGAAGCCTATATCTGTCGCGATTGCGGGTATATTTACAACGATAGGACTCCCTTTGAGAAATTGCCTGATAAGTACTTCTGCCCTGTTTGCGGTGCTCCAAAACGAAGATTTAAGCCCTATGCACCAGCTGTCACAAAAAACGCAAATGATACAACTGTTAGAAAGGCACGAAAAGCAGAAATTCAGAGAGATGAAGCAATTGGGAAGGCACTTCCTATTGCAATTGTAGTGGGAATTGCTGCGCTTGCTGGATTATATTTTTACCTGAATAGCCAATACTAG | 624 | 0.4439 | MPRFPRKLGTHLHIDPLFLSTQPFSYLLLVSLSLCCSRGRVKTKEEMALQMQAATTTNLHTHTALTVNDGLRRPLNLLALKSSFFSGSLNLYLHPNQRHLTSGAPRISMRVASKEAYICRDCGYIYNDRTPFEKLPDKYFCPVCGAPKRRFKPYAPAVTKNANDTTVRKARKAEIQRDEAIGKALPIAIVVGIAALAGLYFYLNSQY. | 208 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca12g06377 | 207 | ProSiteProfiles | Rubredoxin-like domain profile. | 114 | 154 | IPR024934 | GO:0005506 | |
| Seca12g06377 | 207 | SUPERFAMILY | Rubredoxin-like | 114 | 159 | - | - | |
| Seca12g06377 | 207 | CDD | rubredoxin | 117 | 154 | IPR024935 | GO:0005506 | |
| Seca12g06377 | 207 | PANTHER | RUBREDOXIN-LIKE SUPERFAMILY PROTEIN | 47 | 207 | - | - | |
| Seca12g06377 | 207 | Pfam | Rubredoxin | 117 | 151 | IPR024935 | GO:0005506 | |
| Seca12g06377 | 207 | Gene3D | - | 115 | 154 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca12g06377 | Seca-Chr12 | 155744458 | 155747151 | Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca12g06377 | - | - | gmx:100812204 | 238.039 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Seca12g06377 | 12 | 155744458 | 155747151 | Seca4g01810 | 4 | 29969820 | 29971839 | PCT |