Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06339 ATGAGCTCGACCAACTTGACGGGGTTTGCATTGGCGGTGATTTCCAGTGCTTTCATTGGCTCCAGCTTCATCATCAAGAAAAAGGGTCTCCAACTCGCTGGGGTCAACGGCCCTCGTGCCAGTGTTGGAGGCTATGGTTATTTGCTTCAGCCTCTTTGGTGGATCGGAATGCTTACCAGTATGCAAATCTTTTTTTGGTTTTTTAATCTTATAACTTTAATGATTTTGACATTTTCCTTTTTGATTTTCAATATTGTTCTAGTGATTGTTGGAGAGATAGCGAATTTTGTAGCCTACATTTACGCCCCTGCTGTGCTTGTGACTCCACTGGGTGCTTTGAGTATTATTGTTAGTGCTGTCTTAGCACATTTCCTCTTGAAGGAGAAGCTGCAGAAAATGGGCATGCTGGGGTGTGTTCTATGCATTGTGGGATCCACTGTTATTGTACTCCATGCACCTGAAGAGATGTCTCTTACTTCTGTACAACAGATATGGGAATTGGCCACTCAGCCTGCATTCCTCTTGTACACAGCCTCAGCAATTGCTGTAACATTGTTCTTGGTTTTGTATTGTGCTCCCCGCTATGGCCAAACTAATATTTTGGTTTATACTGGAATATGCTCTGTAATTGGGTCCTTGACTGTCATGAGTGTAAAAGCAATTGGCATTGCGATTAAACTTACATTAGAAGGTGCAAACCAGTTTTTCTACCTTCAGACGTGGATTTTTACCATGGTTGCTATCACCTGCATTATTGTCCAACTAAATTACCTTAATATGGCATTGGATAACTTCAACACAGCAGTCGTTTCTCCAATCTATTATGCATTGTTCACAGCTTTTACAATATTAGCCAGTGCAATCATGTTTAAGGACTATTCTGGTCAAAGTATAAGCAGTATTGCGTCAGAACTATGTGGTTTCATCACTGTTTTATCTGGAACAACTGTATTGCACAGTACAAGAGAGCCAGATCCTCCAGTCATTACAGATTTATATACACCATTGTCTCCAAGAGTATCATGGTATTTCCAAAGCAACAGTGAACCCTGGAAACAGAAGGAGGAAGATGTATCACCCTTTAATTTAATTGCAATTATACGGCAAGATCATTTCAAGTGA 1122 0.4064 MSSTNLTGFALAVISSAFIGSSFIIKKKGLQLAGVNGPRASVGGYGYLLQPLWWIGMLTSMQIFFWFFNLITLMILTFSFLIFNIVLVIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFLLKEKLQKMGMLGCVLCIVGSTVIVLHAPEEMSLTSVQQIWELATQPAFLLYTASAIAVTLFLVLYCAPRYGQTNILVYTGICSVIGSLTVMSVKAIGIAIKLTLEGANQFFYLQTWIFTMVAITCIIVQLNYLNMALDNFNTAVVSPIYYALFTAFTILASAIMFKDYSGQSISSIASELCGFITVLSGTTVLHSTREPDPPVITDLYTPLSPRVSWYFQSNSEPWKQKEEDVSPFNLIAIIRQDHFK. 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06339 373 PANTHER UNCHARACTERIZED 4 324 IPR008521 GO:0015095|GO:0015693|GO:0016020
Seca12g06339 373 Pfam Magnesium transporter NIPA 5 60 IPR008521 GO:0015095|GO:0015693|GO:0016020
Seca12g06339 373 Pfam Magnesium transporter NIPA 85 323 IPR008521 GO:0015095|GO:0015693|GO:0016020
Seca12g06339 373 SUPERFAMILY Multidrug resistance efflux transporter EmrE 63 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06339 Seca-Chr12 155323378 155329425 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06339 K22733 - gmx:100799756 594.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06339 12 155323378 155329425 Seca4g01860 4 31159093 31163478 ECH
Seca12g06339 12 155323378 155329425 Seca12g06339 12 155323378 155329425 ECH
Seca12g06339 12 155323378 155329425 Seca4g01860 4 31159093 31163478 PCT