Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06108 ATGTTAATTCAGTGCCTTCCAATTTTTCCAGTTACATATTTACTAGTCAAAGAAAGGGAAGAATGGACTGTGCCGTTACCAGGCCCAGCACTAGACTCTTGTGAAGCTTTGGTTTTGCGGAGGTCTGGAGGATCGGTTGAACTTGTTGATGTCTGTAGTGAGCTTCCACAACTTATTCGTCGGCCAGGCCTCAAGAGATGGAAGGTATTTGACAAGGGCACTTGGTTAGCCTCTTACAAAGATGTTCCTAAGTTTCGTAGAAGTGTAATTCTTCCCAGTATGTTTCCTTTAGGCAAAGGCAATCTGGATCTTGTTGACAGTAGTAATTGGAATGTTGACATAGGAGATGACATTACTGGTGGTGTTAATGGAAATGCTGAAGATGGTATTCAAGCAGTAGAGAATCCTGTGATGCCTGAGTCTGCTGAGGAAGTTTCTGATTTTCCTCTAGAGCATTGCATGAGGATAGTGCCTCATGATCAGAACACTGGAGCATTCTTCATTGCTGTACTGCAAAAAGTTTCTCCCCTGCCAGCTATTCCTGAAAAACCTAAAAAAGAAATTGATGAGCAATATGTAGAACCAGCAAACCAGGGTCTTGAGGATGCACAAGTACCACATATTAATTCATCAGAAAGTGCACATGAAGAAGTTTTAAAAGCAGTTTCAGAGGAAAATGTAAATGACAATGAACCCATTACAGAAGATTTGGAAGTTAGTCCTGTTACATGTGAAGAACAGAATTCCAAGGAAACGGAAGAGCTCCCTAATGTACAAAACATGGTAAAACCCGTTCCAGGCAAAAGAAAGCTACAAATTCAAGGCAAATGGAGAGGTGTTGACCCGGTTGTCTTTTTCAAAGATGAAGCAATTATTAATAGTATAAGGGATTTTTATGGAATCGACGAGCATTTTCCATTCAATGGTCACCTTGTTACAAGAAACAATGATCCAAGTCATGTGAAAAGAATTTACTATATCTCCAAGTCAGTCAAGGATGTTCTTGAATTGAACTTCTCAGTTGGGCAACAACTTAAAATAACCTCAATTGGCCTGAAGATGTTTGAAAGACAAACAGCACGACAAGGTAGCTCTGCACCATGTGCTTTCCGGATATCATCCGAAGGATTGCCCCTTATTCTCCCATATATAACCAAACAAATTCTACAGGCATCTCCAGTAGACTTCAAGCATCTTTTGCAGAACAAAGATGTAAAATTTGAAGATTTTGTTGATGCCGAGTTTGGTGAAAAGGCAGCAAACCTAATGCCAGGCTGTTGTGTGGTAATTCTGGGTAAAGGGAACAGAGTTGCTACGGAGTCCCTCAAAGTGGATGAGTCAACAATAGCTATTGGATGCTGGAAAGGTAGGTCGAGATTGACAGTGATGGTAACTGTAATGGACTGCCAAGAACTGCTTGAAAGGCTTTTAATACGTCTAGACACAGAAAAGGACTCCTCTGGGAATGTGGACAAATCTTCTAATGATGTGGGAGGTGAAGTACAGCCTGTACAGGAGTTGAACGGTAAAAATGATAATGATGTGAATGCTACTGTAAGTTAG 1563 0.4075 MLIQCLPIFPVTYLLVKEREEWTVPLPGPALDSCEALVLRRSGGSVELVDVCSELPQLIRRPGLKRWKVFDKGTWLASYKDVPKFRRSVILPSMFPLGKGNLDLVDSSNWNVDIGDDITGGVNGNAEDGIQAVENPVMPESAEEVSDFPLEHCMRIVPHDQNTGAFFIAVLQKVSPLPAIPEKPKKEIDEQYVEPANQGLEDAQVPHINSSESAHEEVLKAVSEENVNDNEPITEDLEVSPVTCEEQNSKETEELPNVQNMVKPVPGKRKLQIQGKWRGVDPVVFFKDEAIINSIRDFYGIDEHFPFNGHLVTRNNDPSHVKRIYYISKSVKDVLELNFSVGQQLKITSIGLKMFERQTARQGSSAPCAFRISSEGLPLILPYITKQILQASPVDFKHLLQNKDVKFEDFVDAEFGEKAANLMPGCCVVILGKGNRVATESLKVDESTIAIGCWKGRSRLTVMVTVMDCQELLERLLIRLDTEKDSSGNVDKSSNDVGGEVQPVQELNGKNDNDVNATVS. 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06108 520 MobiDBLite consensus disorder prediction 485 520 - -
Seca12g06108 520 Gene3D Vaccinia Virus protein VP39 35 266 IPR029063 -
Seca12g06108 520 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 345 357 IPR023270 GO:0016428
Seca12g06108 520 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 50 69 IPR023270 GO:0016428
Seca12g06108 520 MobiDBLite consensus disorder prediction 491 520 - -
Seca12g06108 520 PANTHER NCL1 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 38 489 IPR023267 GO:0001510
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06108 Seca-Chr12 153006593 153010668 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06108 K15334 - gmx:100808859 763.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06108 12 153006593 153010668 Seca12g06108 12 153006593 153010668 ECH
Seca12g06108 12 153006593 153010668 Seca6g01884 6 76656254 76658485 PCT