Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05939 ATGGGCCCAAACAACCAAGACGACGACGTTTTCTTCGACGCCTTTCGTGTTTGCCCCTTCCACCATTGCTCCGGCGACGCCGATCACTCGCCGGAATCTTCCGCCTCCGCTTCCACCGTTTGCTTCTCCGACACACCCTCTCCGTCTCCGGCGACCACAATCCGGCACCGTTCAATTCGCCGTCAGTCACCGGTTAGGGAATCCGCCGACACCGTTTCCGAGAGCAATTTGATCAACGGTGCCACAATGAGCTTTCAGAGTAATCAAAATCATGCAAATTCGAAGGAAAATGAGAGAATTCCCGAGAAATGCGATTCAAATCAAGGGAAAGATCTTTCCTTACCATCTACCGAAGAGCGAAACGAGGAATCTACATTAACTACAGCCACACGCGACGAAGGACCCGGCGATTCCGTTGACTCGGCGGCGGAACTCGGTGATTCTTCTTCGAACTTGCTTGAATATGTAGCTGGGTTGGTGGTTAGGGCAATTGTGTTTCAAATCAAGATTTTCATTGTGTTGATAAAGTTGCCAATGTTGTTACTGTTTCACACTGGCATGTTTTTTGTGGATCCTTTTGGAACAATGAGAAAGGGGAAGGGTTTTTTTATAGGGATTTTGGGTAGAGTGTGGTGTTTTGTTTGTGGCTGCATTGGTCCTTCAGCTCAGGGATGGTTCCAGGAGCACAATTCATTCTGGAATGTTGCCTTTAGGTGTGGTTGGGGCTTTTTGTGGTCAATCTATGTGTGCTGCATTTTGTTTGCTATTTTGGTTTTCTCACTTGTGGTTAGTGGGTTTTTGGTGAAGTACTTGGTGGAGAAGCCGTTTCAGATGAGGCAAGTTTTGAATTTTGACTACACCAAGCAGAGCCCTGTTGCATTTGTGCCCATAACATCATGTGCTGGTATTGGTGGTGTGCATGATTCTGAGAATGACTTTGCAGTTAGCAGGTGGATGAGTAGAAAGGTTATACCTGCTAAACAAAAGGTGCAGGTCACTGTTTCATTGCTGGTGCCAGAGTCAGGATACAACACAAATCTTGGCGTCTTTCAGGTAATCAGGGTAGATTTCTTATCTTCTAATGGTAAAACAATTGCAAGTTCGAGCCAACCTTGCATGTTAAAGTTCAGAAGTGAGCCTATTCGCCTAATCATGACTTTCCTCAAGATGGCTCCTCTTATTACTGGTTATATATCAGAAACCCAGACTCTGAATGTCAAGATGAGAGGTTTTGTTGAAGGGGATGTACCTACTTCATGTTTAAAAGTAACCCTTGAGCAGCGAGCAGAATATCTACCTGGCGCTGGCATTCCTCAATTATATGATTCATCTATATTTATTGAATCAGAACTGCCTTTTTTCAAGAGGATTATATGGAATTGGAAGATGACCATATTTGTATGGATTACAATGATGGTATTTATGATGGAGTTACTCTTTGTTCTACTGTGTTGTTGGCCTATAATTATTCCAAGAACCAGGCAAAGGAGTGGTTCTGGTGATTAA 1506 0.4416 MGPNNQDDDVFFDAFRVCPFHHCSGDADHSPESSASASTVCFSDTPSPSPATTIRHRSIRRQSPVRESADTVSESNLINGATMSFQSNQNHANSKENERIPEKCDSNQGKDLSLPSTEERNEESTLTTATRDEGPGDSVDSAAELGDSSSNLLEYVAGLVVRAIVFQIKIFIVLIKLPMLLLFHTGMFFVDPFGTMRKGKGFFIGILGRVWCFVCGCIGPSAQGWFQEHNSFWNVAFRCGWGFLWSIYVCCILFAILVFSLVVSGFLVKYLVEKPFQMRQVLNFDYTKQSPVAFVPITSCAGIGGVHDSENDFAVSRWMSRKVIPAKQKVQVTVSLLVPESGYNTNLGVFQVIRVDFLSSNGKTIASSSQPCMLKFRSEPIRLIMTFLKMAPLITGYISETQTLNVKMRGFVEGDVPTSCLKVTLEQRAEYLPGAGIPQLYDSSIFIESELPFFKRIIWNWKMTIFVWITMMVFMMELLFVLLCCWPIIIPRTRQRSGSGD. 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05939 501 PANTHER BERNARDINELLI-SEIP CONGENITAL LIPODYSTROPHY 2 HOMOLOG BSCL2 PROTEIN 125 499 IPR009617 GO:0019915
Seca12g05939 501 MobiDBLite consensus disorder prediction 29 58 - -
Seca12g05939 501 MobiDBLite consensus disorder prediction 65 94 - -
Seca12g05939 501 MobiDBLite consensus disorder prediction 109 134 - -
Seca12g05939 501 Pfam Putative adipose-regulatory protein (Seipin) 255 474 IPR009617 GO:0019915
Seca12g05939 501 MobiDBLite consensus disorder prediction 25 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05939 Seca-Chr12 151194676 151197527 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05939 K19365 - gmx:100813988 702.205
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g05939 12 151194676 151197527 Seca12g05939 12 151194676 151197527 ECH
Seca6g04709 6 114644628 114647232 Seca12g05939 12 151194676 151197527 ECH
Seca12g05939 12 151194676 151197527 Seca6g04709 6 114644628 114647232 PCT