Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05709 ATGGCCTCCAGCGACAGCGAGACAGAGGTCGAGAGCAAGAGTCGTCAAGAACTGAAGCATCTTGGGTTTGTGAAGATTGCTGCAATTCAAGCTTTTGTGTGTATCTCCAATCTCTATCACTACGCAAAGCAGAACTCAGGACCTTTGAGATCTGCTGTAGGAACCGTGGAAGGCACTGTTACTACTGTTCTTGGTCCTCTCTATGACAGAATCAAGGGCGTTCCTCACGATCTTCTTGTTTTTGTGGACAACAAGGTGGATGAAGCTACCCACAAATTCGATGAGCATGCTCCTCCTTTGGTTAAGCAGGTAGCAAGCCAAGCCAAGGGTTTGATTCAGGAAGTGACACACAAAGCTGAGAAAGTTGTAAGTGAAGCTAAATCTGGTGGGCCACGAGGTGCTGCACAATATGTGGCTACAGAGTCTAAGCAAATTGTGCTAATTGGGTCAGTAAAATTATGGGTCGGTCTCAACCACTATCCACCATTCCATGCAGTGGCAGAGATGGCAGTTCCCACAGCTGCACATTGGTCAGGAAAATACAACCAAGTGGTCAAGGACATGACTGGAAAGGGATTTGTCGTCTTTGGGTATTTACCTTTAATTCCCATTGATGACATAGCTAAGGCATTTAAACAAGGAGAATCCAATGTGAATGGAGATGAAGCAGCTACCAAGGGTCAGGGATCGGAATCTTAA 699 0.4592 MASSDSETEVESKSRQELKHLGFVKIAAIQAFVCISNLYHYAKQNSGPLRSAVGTVEGTVTTVLGPLYDRIKGVPHDLLVFVDNKVDEATHKFDEHAPPLVKQVASQAKGLIQEVTHKAEKVVSEAKSGGPRGAAQYVATESKQIVLIGSVKLWVGLNHYPPFHAVAEMAVPTAAHWSGKYNQVVKDMTGKGFVVFGYLPLIPIDDIAKAFKQGESNVNGDEAATKGQGSES. 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05709 232 PANTHER REF/SRPP-LIKE PROTEIN OS05G0151300/LOC_OS05G05940 6 224 IPR008802 -
Seca12g05709 232 Pfam Rubber elongation factor protein (REF) 13 213 IPR008802 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05709 Seca-Chr12 148748121 148749467 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05709 - - gmx:100499806 333.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g05709 12 148748121 148749467 Seca12g05709 12 148748121 148749467 ECH
Seca6g01681 6 71094870 71098006 Seca12g05709 12 148748121 148749467 PCT