Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05190 ATGGAAGCTACATCTAAATACAGAAGGTACAGAAAAGTTGTTTTATCTCCTACAAGCACTGGTTGCTATGCTAGCAGAAATATTTCTAGTTCTCAGCCTAGTGGGGAAGCAAAAGTTTCCTGCATATGTTGCAAAGCAGAGTGTTCAATGCCCTTAAGAACTAATCCAAACTGTTGCTTTGTGTGCCATAATGTTTGTAATTCAACTTTGGGATGTGGGAAATCAAAAGAAGACTGTGGAATAGGCTGTTGTTCAGTGAAGAAAATTGGCACCAAATTGTTCAAACTCTGTCATCATGAAAAAAAAGGAAATTTGCTTAGCGGGCCATCTGTGGCACCAAATTCTTCAATTGTCTTGCCCAGCAGATACAACAAACGTGCAGTTCTCTTTGGAGTTTCTTACTCCAAAAAGAAATTCAAACTCAAGGGAGCCATTAATGACATTAATAACATGAGGGAGCTTCTGATTAAGAATTTTAAGTTTCCAAATGAGTGCATAAGAGTCCTCACAGAACAAGAGAAGAATGCCAATTTAATACCAACAAAACACAACATATTGGAGTCCTTAAGGTGGCTTGTGAAGGACTGTCAGGCAGGAGACTCATTGGTGTTTTATTTCTCAGGACATGGTTTGCAACAACCAGATTTCAAAGAAGATGAAATTGATGGGTTTGATGAGACTCTTTGTCCTGTTGATTTTATGAAAGAAGGAATGATCATTGACAATGACATAAATTCTACCATTGTTTGGCCACTCAAGAAAGGTGTCACTCTTCATGCTATTGTAGATGCTTGTCACAGTGGAACAATTCTTGATCTTTTATATGTTTTTAAATATGAAAGTGGCATTTGGGAGGATAACAAGCCTCCTTCTAAAGAACCTATGAGAAAACATACAAGTGGTGGATTGGCTATTTGTCTGAGTGCTTGTGAAGATAGCCAGACAGCAACTGATAGCGCAGTTTTTGGTGGAAAAGGAATGAATGGTGTTCTGACTTATCTTTTCACAAAAACAATCAGAGAATGCCCTGAAATAACTTATGGACATCTACTACAAAAGATGCATGAAGAAATTAAAAAGATTAACAACCGAAGCAGATGCAATAACCGCTTCTTGCAATTCCATCGTAAAAACATATTGCAGGATCCTCTTTTATCATCATCTGAGAAATTTGATCAAACAATGGGAAGCAGACAACAAAGATGTAACCACTGTGGAACATTACTAGTGGTTCCATCAGAGGTCCAATCCTTTAAGTGTGCAGTGTGCCATGGCATCACTCAGATTCGACCCACAGGTCCACTGAGTCAAGCTTACAACTCTGTTTCTCATGTCACAGGTCGTTTCAGAGGCTTCTTAAATGCTATAATGACTAGTTCAGTTAACAGCAACATGGGCTATGGAACAACTCATTTGGGGTATTATCCTCAACTTCAGCCATTAAGGCCATCATACCCCTTGATTCCTCCTTCTCCATATGGCTCAAAGAGAGCAGTGTTATGTGGAATTTGCTATCATGGGCGTAGTTACAGACTTAAGGGCTCTGTGAATGATGTGAAGTGCATGAAATATTTTCTAATTAACCAGTTCGGGTTTCCAAGTGACTCCATTCTCATGCTCACAGATGACAAAGAAGATAGAAACCCACTAAGAATCCCAACGAGATATAACATTCAAATGGCTTTGAGGTGGCTGCTTGAGGGTAGCAGATCAGGGGACTCATTGGTGTTCCACTTCTCAGGACATGGCACACAGGAAGTAAACATGGATAAGATTCATGGATATGATAGAGCAATTTGCCCTGTTGATTATGAGCATAAGGGGAAGATGCTCAGTGATGAAATTAATGCTACAATTGTTAGACCATTACCAAGTGGTACTAAACTTCATGCCATTATTGATGCATGCCATAGTGGGACTGTTCTTGATTTATCATTTGTGTGCAAAATGAACAGGGAAGGGTATTACACATGGGAGGATCAAGGACATCCCATAGGTGATAAAGGTACAAAAGGAGGGCTAGCAATTTGTATTTCAGCTTGTGATGATGGTCAAATCTCCATGGATACCTCTGCCTTAAGTGGTAAAGAAGTTACTGGTGTGTTGACTTATAGTTTCATCCAAACGATGCAAAATGAACCTGGATTGACTTATGGCCGCTTGCTAAGTGCCATGCGTTCAACCATCCATGGGACTAAAGCAGGAATTGTTGTTCTAAATGGCCCAATTGCATCACTGTTAAATAGAATTCTTGGTACGCGCATCAGACAGGAGCCACAACTGTCGTCTTCGGAGATGTTTGACGTGTATAAAAAGCAGTTTGTGCTATGA 2331 0.3981 MEATSKYRRYRKVVLSPTSTGCYASRNISSSQPSGEAKVSCICCKAECSMPLRTNPNCCFVCHNVCNSTLGCGKSKEDCGIGCCSVKKIGTKLFKLCHHEKKGNLLSGPSVAPNSSIVLPSRYNKRAVLFGVSYSKKKFKLKGAINDINNMRELLIKNFKFPNECIRVLTEQEKNANLIPTKHNILESLRWLVKDCQAGDSLVFYFSGHGLQQPDFKEDEIDGFDETLCPVDFMKEGMIIDNDINSTIVWPLKKGVTLHAIVDACHSGTILDLLYVFKYESGIWEDNKPPSKEPMRKHTSGGLAICLSACEDSQTATDSAVFGGKGMNGVLTYLFTKTIRECPEITYGHLLQKMHEEIKKINNRSRCNNRFLQFHRKNILQDPLLSSSEKFDQTMGSRQQRCNHCGTLLVVPSEVQSFKCAVCHGITQIRPTGPLSQAYNSVSHVTGRFRGFLNAIMTSSVNSNMGYGTTHLGYYPQLQPLRPSYPLIPPSPYGSKRAVLCGICYHGRSYRLKGSVNDVKCMKYFLINQFGFPSDSILMLTDDKEDRNPLRIPTRYNIQMALRWLLEGSRSGDSLVFHFSGHGTQEVNMDKIHGYDRAICPVDYEHKGKMLSDEINATIVRPLPSGTKLHAIIDACHSGTVLDLSFVCKMNREGYYTWEDQGHPIGDKGTKGGLAICISACDDGQISMDTSALSGKEVTGVLTYSFIQTMQNEPGLTYGRLLSAMRSTIHGTKAGIVVLNGPIASLLNRILGTRIRQEPQLSSSEMFDVYKKQFVL. 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05190 776 Gene3D - 470 776 - -
Seca12g05190 776 Gene3D - 95 399 - -
Seca12g05190 776 SUPERFAMILY Caspase-like 485 639 IPR029030 -
Seca12g05190 776 PANTHER METACASPASE-4 493 774 - -
Seca12g05190 776 Pfam LSD1 zinc finger 402 425 IPR005735 -
Seca12g05190 776 Pfam Caspase domain 125 389 IPR011600 GO:0004197|GO:0006508
Seca12g05190 776 Pfam Caspase domain 496 769 IPR011600 GO:0004197|GO:0006508
Seca12g05190 776 SUPERFAMILY Caspase-like 119 354 IPR029030 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05190 Seca-Chr12 140465484 140471722 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05190 K22684 - gmx:100783197 605.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g05190 12 140465484 140471722 Seca12g05190 12 140465484 140471722 ECH
Seca12g05190 12 140465484 140471722 Seca6g05136 6 118505405 118512400 PCT