Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05054 ATGGAACAAAACTCCCTATGTTGCTTTTCATTAGCACAAAACTTCCCAAAAGACTACCTTGACGTGCACAATAAGGTTCGCGCTGAGGTTGGTGTTGGTCCACTCTCATGGAACATCACCCTTGCAGCCTATGCTCAGAAATATGCCAACTCAAGGATCCGAGACTGCAAAATGGAACACTCTGGAGGGCCATTTGGGGAGAACCTTGCTTTGGGTTATGGAGAAATGAAGGGCACAGACGCTGTGAATTTATGGCTAACAGAGAAGCCTAACTATGATTATGATTCAAACACATGTGTCAAAGATGAGTGCTTGCATTATACTCAGATAATTTGGCGTGATACAGTTAATCTTGGGTGTGCTAGGGTAAAGTGTAACAATGGGTGGATGTTTGTTATTTGCAACTATGATCCACCAGGCAATTATATAGGCCAACAACCTTACTAG 447 0.4295 MEQNSLCCFSLAQNFPKDYLDVHNKVRAEVGVGPLSWNITLAAYAQKYANSRIRDCKMEHSGGPFGENLALGYGEMKGTDAVNLWLTEKPNYDYDSNTCVKDECLHYTQIIWRDTVNLGCARVKCNNGWMFVICNYDPPGNYIGQQPY. 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05054 148 Gene3D CAP 9 148 IPR035940 -
Seca12g05054 148 PRINTS Allergen V5/Tpx-1 family signature 81 94 IPR001283 -
Seca12g05054 148 PRINTS Allergen V5/Tpx-1 family signature 131 144 IPR001283 -
Seca12g05054 148 PRINTS Allergen V5/Tpx-1 family signature 104 120 IPR001283 -
Seca12g05054 148 PRINTS Allergen V5/Tpx-1 family signature 35 53 IPR001283 -
Seca12g05054 148 CDD CAP_PR-1 16 148 - -
Seca12g05054 148 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 15 145 IPR001283 -
Seca12g05054 148 SUPERFAMILY PR-1-like 12 148 IPR035940 -
Seca12g05054 148 Pfam Cysteine-rich secretory protein family 20 136 IPR014044 -
Seca12g05054 148 ProSitePatterns CRISP family signature 2. 131 142 IPR018244 GO:0005576
Seca12g05054 148 FunFam Putative pathogenesis-related protein 1 13 148 - -
Seca12g05054 148 SMART SCP_3 14 144 IPR014044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05054 Seca-Chr12 137430629 137431075 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05054 K13449 - gmx:100527778 240.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g05054 12 137430629 137431075 Seca12g05054 12 137430629 137431075 ECH
Seca12g05050 12 137236766 137243018 Seca12g05054 12 137430629 137431075 PCT