Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05050 ATGAAGTTATACAAGGTTCCATTTTTTGTCTTGTGTGTCATGGTCATAGCCACTACTATTGCTCATGTTGGCTATGCCCAAGACTCACCAGCAGACTTCGAGAATGCCCACAACGCTGCAAGGTCACAAGTGGGTGTTCCACCTTTGAAATGGGATGACACCGTTGCTGCTTACGCCCTAAATTATGCCAATCAAAATAAAGGTCCTAACTGCAAGGACACTGACCACTCAAACGGACCTTACGGGGAGAACCTCGCATGGGACAGTGGTGACGTAAGTGGTGCCGAAGCAGTGAGAAGGTGGGTTGATGAGAAAGCTAACTATGATTACAGTTCAAATTCTTGTGATGGGGTTTGTGGGCACTATACACAGGTGGTTTGGAGAGACTCAGTTCGCCTTGGATGTGCCAAAGTAAAGTGTGATAACAATGGAGGCACATTCATTATTTGCAACTATGACCCCGCTGTGGTGTTTAGCAAGGTTCCATTTTCTCTCCTTTGTATCTTGGGCTTAGCCCTTATGGCCCATGTTGTCCAAGCCCAAGACTCGGCAACAGACTTCCTCAACGCCCACAACGCGGCAAGATCAAAAGTGGGTGTTCCACCTTTGGCATGGAATGAATCTGTTGCTGCTTTCGCTAAAAATTATGCTGATCAACGTAAAGGGGACTGCCAGCTTATACACTCAGGGCCTTCTTACGGTTATGGGGAGAACCTCGCAGGCAACACCGCTGACCGAAGTGGCGTCAATGCAGTGATGTCGTGGGTGGGTGAGAAAGCCAATTATGATTACAATTCAAACTCATGTGTTGGTGGTGAGTGCAGGCACTATACTCAAGTGGTTTGGAAAAACTCAACCAGCCTCGGATGTGCCAAAGTAAGGTGTAACAATGGAGGCACATTCATTGGTTGTAATTATTATCCCCCTGGCAATTGGCCTGGCCAAAGACCTTACTAA 957 0.4723 MKLYKVPFFVLCVMVIATTIAHVGYAQDSPADFENAHNAARSQVGVPPLKWDDTVAAYALNYANQNKGPNCKDTDHSNGPYGENLAWDSGDVSGAEAVRRWVDEKANYDYSSNSCDGVCGHYTQVVWRDSVRLGCAKVKCDNNGGTFIICNYDPAVVFSKVPFSLLCILGLALMAHVVQAQDSATDFLNAHNAARSKVGVPPLAWNESVAAFAKNYADQRKGDCQLIHSGPSYGYGENLAGNTADRSGVNAVMSWVGEKANYDYNSNSCVGGECRHYTQVVWKNSTSLGCAKVRCNNGGTFIGCNYYPPGNWPGQRPY. 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05050 318 Gene3D CAP 27 164 IPR035940 -
Seca12g05050 318 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 185 315 IPR001283 -
Seca12g05050 318 ProSitePatterns CRISP family signature 1. 120 130 IPR018244 GO:0005576
Seca12g05050 318 Gene3D CAP 177 318 IPR035940 -
Seca12g05050 318 Pfam Cysteine-rich secretory protein family 188 306 IPR014044 -
Seca12g05050 318 Pfam Cysteine-rich secretory protein family 35 152 IPR014044 -
Seca12g05050 318 CDD CAP_PR-1 186 318 - -
Seca12g05050 318 PRINTS Allergen V5/Tpx-1 family signature 301 314 IPR001283 -
Seca12g05050 318 PRINTS Allergen V5/Tpx-1 family signature 97 110 IPR001283 -
Seca12g05050 318 PRINTS Allergen V5/Tpx-1 family signature 119 135 IPR001283 -
Seca12g05050 318 PRINTS Allergen V5/Tpx-1 family signature 49 67 IPR001283 -
Seca12g05050 318 SMART SCP_3 182 314 IPR014044 -
Seca12g05050 318 SMART SCP_3 28 158 IPR014044 -
Seca12g05050 318 ProSitePatterns CRISP family signature 1. 275 285 IPR018244 GO:0005576
Seca12g05050 318 PRINTS Venom allergen 5 signature 118 137 IPR002413 -
Seca12g05050 318 PRINTS Venom allergen 5 signature 95 110 IPR002413 -
Seca12g05050 318 PRINTS Venom allergen 5 signature 49 67 IPR002413 -
Seca12g05050 318 FunFam CAP, cysteine-rich secretory protein, antigen 5 27 162 - -
Seca12g05050 318 ProSitePatterns CRISP family signature 2. 301 312 IPR018244 GO:0005576
Seca12g05050 318 SUPERFAMILY PR-1-like 165 318 IPR035940 -
Seca12g05050 318 SUPERFAMILY PR-1-like 7 155 IPR035940 -
Seca12g05050 318 FunFam Putative pathogenesis-related protein 1 181 318 - -
Seca12g05050 318 CDD CAP_PR-1 30 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05050 Seca-Chr12 137236766 137243018 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05050 K13449 - dzi:111308062 318.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g05050 12 137236766 137243018 Seca12g05050 12 137236766 137243018 ECH
Seca12g05050 12 137236766 137243018 Seca12g05054 12 137430629 137431075 PCT