Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03717 ATGGCAACTGAAAGCGTTGTTGAGTCCTCTGTTAAAAGGCAGAGAGATGATGAAGAAAATGGGGTCTCTGTTTCCATTGTCTCCATGGATATGGAAGGTGGCAAGGACCCAGATGGTAATGGCATATCATCTGTGATTCCTGGGTGGTTCTCTGAAATTAGCCCAATGTGGCCTGGAGAGGCTCACTCCTTGAAGGTAGAAAAGATTTTGTTTCAAGGAAATTCTGAATACCAGAAAATCATGGTCTTCCAGTCATCAGCATATGGCAAGGTTCTTGTTTTGGATGGAGTTATTCAGCTCACAGAAAGGGACGAATGTGCCTACCAAGAAATGATCACTCATCTTCCTCTTTGCTCTATTCCAAACCCCAAAAAGGTTTTGGTTATTGGTGGAGGTGATGGAGGGGTCCTGCGTGAAGTATCACGTCATTCTTCAGTTGAAAAGATAGACATTTGTGAAATTGACAAAATGGTTGTTGATGTATCCAAACAATTTTTCCCTGATGTTGCAGTAGGTTTTGATGATCCACGTGTGACACTTCGTATCGGTGATGGAGTTGCATTCTTGAAGGAAGCTCCAGAGGGAACTTATGATGCAGTTATAGTGGATTCATCTGACCCTATCGGTCCTGCTAAGGAGCTTTTTGAAAAGCCCTTTTTTGAGTCTGTTGCAAAGGCTCTTCGTCCAGGAGGAGTTGTGTGTACTCAGGCAGAAAGTATATGGCTTCATATGGATATAATTGAGGATATTGTAGCCAATTGTCGCCAGATTTTTAAAGGCTCTGTCAACTATGCTTGGACTACAGTTCCTACATACCCAAGTGGGATGATTGGTTTTATGCTTTGCTCAACTGAGGGACCTCCTGTTGATTTCAAGCATCCAGTGAATCCCATAGATGAAAAAGAGTTTCAGAAGTCGGCAAGGCCACTGAAATTTTACAACTCTGAGATTCATACAGCAGCTTTCTGTTTGCCATCGTTTGCGAAGAGAAAGATTGGTTCCAAAGCAAATTGA 1014 0.425 MATESVVESSVKRQRDDEENGVSVSIVSMDMEGGKDPDGNGISSVIPGWFSEISPMWPGEAHSLKVEKILFQGNSEYQKIMVFQSSAYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFDDPRVTLRIGDGVAFLKEAPEGTYDAVIVDSSDPIGPAKELFEKPFFESVAKALRPGGVVCTQAESIWLHMDIIEDIVANCRQIFKGSVNYAWTTVPTYPSGMIGFMLCSTEGPPVDFKHPVNPIDEKEFQKSARPLKFYNSEIHTAAFCLPSFAKRKIGSKAN. 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03717 337 FunFam Spermidine synthase 1 100 337 - -
Seca12g03717 337 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 126 139 IPR030373 -
Seca12g03717 337 CDD AdoMet_MTases 125 236 - -
Seca12g03717 337 PIRSF Spermidine_synth 38 337 IPR030668 GO:0006595
Seca12g03717 337 PANTHER SPERMIDINE/SPERMINE SYNTHASE 40 334 IPR001045 GO:0003824
Seca12g03717 337 Gene3D Spermidine synthase, tetramerisation domain 41 99 IPR037163 -
Seca12g03717 337 FunFam Spermidine synthase 1 40 99 - -
Seca12g03717 337 Pfam Spermidine synthase tetramerisation domain 48 102 IPR035246 -
Seca12g03717 337 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 45 332 IPR029063 -
Seca12g03717 337 MobiDBLite consensus disorder prediction 1 24 - -
Seca12g03717 337 Hamap Polyamine aminopropyltransferase [speE]. 48 333 IPR001045 GO:0003824
Seca12g03717 337 Pfam Spermine/spermidine synthase domain 105 292 - -
Seca12g03717 337 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 47 284 IPR030374 -
Seca12g03717 337 NCBIfam spermidine synthase 49 327 IPR001045 GO:0003824
Seca12g03717 337 Gene3D Vaccinia Virus protein VP39 100 337 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03717 Seca-Chr12 95042234 95046932 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03717 K00797 - gmx:100776863 613.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g03717 12 95042234 95046932 Seca12g03717 12 95042234 95046932 ECH
Seca10g01497 10 16183954 16188289 Seca12g03717 12 95042234 95046932 PCT